Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3959 ATGGATTCCCCACAATCTGTTGTGTCACCCTTTAGAAGCTCAATCTTGGGTGAGGGTGAGAAGCACAAGTCTGATGTTTTTGTGCAAAGCAACAGTCCTTCCTCTAAGGAGATTGAAGTCAACGGGAAGGAAACTATCATGTCAAATGCCGATGAATGTGTTGGAGTGCTTGATGTTTACATACATCAAGCTAGGGATATTCAGAACATCTGCATATACCATAAGCAAGATGTTTATGCTAAGATTTGCCTGACGAGTAGTCCTGAGAATGCTGTTTCTACGAAGACTATCAATGGAGGTGGAAGGAACCCTGTGTTTAATGACAATCTTCGTCTCAATGTTTGTAATGTTGATTCGTCTCTTAAATGTGAGTTATGGATGCTTAGCAGGGTGAAGAATTATCTCGAAGATCAGTTGCTTGGTTTTGCTTTGGTGCCGTTGTCTGAAGTACTAGTTCAGAATGGGAAGCTAGAGAAAGAGTTCTCGCTTTCTTCAACTGATCTATTTCACTCTCCTTCAGGGTTTGTTCAGTTGACAATTGCTTATACTGGTGCTACGCCTGATGTTATGGCAATATCGGCAATGCCTGGCGAGGAGGCCACACGTGCTGCTGCGCAGGACTTGGAAACATCCGAGTCATTGGCCAGAGATTTGGGTAAAATTGAGTTTCCAGATCCTAAGATCGCGAATGAAGATCACTTAATGGTTTCAGAATATTTTGGCATTTCGTGCGAGGAGAGTCAATGCTCTGATAGCTTAGCCAATTCTGATGCTGACAATCATAGTTCTGAAGCCGGTGTTCGTCTAGTGGAAAGCTTCTCAGCATGTAGCGGTGAGTCTGTGCAAGTGCAACCTCACAAGGCTGATTCTCCGCCGAGCAGTGTGTCGACAAATGGGGTTTCTTCTTCTGCACCCGAAAGCTCCGAATCATCTGATGCTGCTGCTGCAGCTTCAAAGTCCCCGGGTGATGAACAAGTTTCAGGAACCAAAGAGGTACAAAAAGTGGATGTCAAAGATGGTGAGAGTGATTCGTCAAGTGTTGTTCCGAATGAATTATTCCCTAAGCCTATTGTGACTGTCAACATAGAGCCAGAGCCGACGATGGTGCAGCAGGATATCGTTGATATGTACATGAAAAGTATGCAGCAATTTACCGAGTCATTAGCGAAAATGAAGCTTCCAATGGACATTACAAATGAACCAACTAATTCAGGAAATTCAAGCACCGAGCAGAAACTACCGCAATCTAAGAATGCCAACTCCCGTGTCTATTACGGGAGCAGAGCTTTCTTCTGA 1296 0.4414 MDSPQSVVSPFRSSILGEGEKHKSDVFVQSNSPSSKEIEVNGKETIMSNADECVGVLDVYIHQARDIQNICIYHKQDVYAKICLTSSPENAVSTKTINGGGRNPVFNDNLRLNVCNVDSSLKCELWMLSRVKNYLEDQLLGFALVPLSEVLVQNGKLEKEFSLSSTDLFHSPSGFVQLTIAYTGATPDVMAISAMPGEEATRAAAQDLETSESLARDLGKIEFPDPKIANEDHLMVSEYFGISCEESQCSDSLANSDADNHSSEAGVRLVESFSACSGESVQVQPHKADSPPSSVSTNGVSSSAPESSESSDAAAAASKSPGDEQVSGTKEVQKVDVKDGESDSSSVVPNELFPKPIVTVNIEPEPTMVQQDIVDMYMKSMQQFTESLAKMKLPMDITNEPTNSGNSSTEQKLPQSKNANSRVYYGSRAFF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3959 431 MobiDBLite consensus disorder prediction 280 315 - -
Psa5g3959 431 MobiDBLite consensus disorder prediction 399 423 - -
Psa5g3959 431 Pfam C2 domain 55 162 IPR000008 -
Psa5g3959 431 SMART C2_3c 56 159 IPR000008 -
Psa5g3959 431 MobiDBLite consensus disorder prediction 280 350 - -
Psa5g3959 431 ProSiteProfiles C2 domain profile. 42 161 IPR000008 -
Psa5g3959 431 MobiDBLite consensus disorder prediction 399 431 - -
Psa5g3959 431 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 431 - -
Psa5g3959 431 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 55 186 IPR035892 -
Psa5g3959 431 PANTHER EXPRESSED PROTEIN 1 431 - -
Psa5g3959 431 CDD C2 57 163 - -
Psa5g3959 431 Gene3D C2 domain 50 212 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3959 Psa-Chr5 311457651 311458946 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3959 - - gmx:100804602 662.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3959 5 311457651 311458946 Psa5g3959 5 311457651 311458946 ECH