Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3958 ATGATGTCATCAAACCAGAACCTAAAAGACCTACAATGGTTTCTTCAAGCAATCAACATGGAGAACCAAAACCTACACAGCATTTCCTTCTACCTTTCCCAACCAACTTCATCTTGTTACCAAGAAACAAACAACTCCATAAACATAAACATTTCCAAGGAAAATCATCACCACTTTTCCAACCTCTTAACCTCACTAGCTTCATCATTCAACAACACAAATTCCACTTTAAGAAACCTGGAGTTTCACAGAGTTGAATGGGAGTCACAACAGGTAAAAAGCCTTGCAACCCTTCTGAGTAATCACCTAACCATAAAGCAAATTCTTTTTAAAAGAAACAGGTTCAATGGAAGAACAATGTTAGATCTTTCTGAGATTTTGAGGGAGAATAAAGTGATTAAAGAGATTATGCTTTCTGAATCATGTATTGGTTCTATTGGAGCTGGACTAATAGCTTCTTCTCTTATGGTGAATCATAGTTTAGAGGAATTGCAGATTTGGGAAGATTCAATAGGTTCAAGAGGTGCTGAAGAGATTTCAAAGATGATTGAAGTTAATCCATCTCTTAAGCTGTTAACAATTTTCGACTCGAATTTCATCACGGCTACACCTCTTATATCGTCGGTTTTGGCGAGGAATAGAGCTATGGAAGTTCATGTTTGGAGCGGTGAACGAAATGGCGAAAGAAGTTCTAAGGTTGTTGAATTTGTACCTGGTAACAATACGCTTCGAGTTTACAAGCTTAATCTTTCAGGTACTTGTAGGGTTGCTTGTTCTTTAGGAATGAATTTGACTGTTAAGTCACTTGACATGACTGGTGTGAAGATAAAATCGAAATGTGCTAAGGAATTTAGATGGGTTTTAGAGCAAAACCAAACGCTAAAAGAGGTTAATTTTTCAAGAACATGTCTTAAAGATAAGGGCATTGTGTACATTGCTGCTGGACTATTCAAGAATCACAGTCTGCAAAAGTTATATCTAACCGGAAATTTGTTCGGTGGAATAGGGGTCGAGCATTTACTTTGTCCTCTGAGTAGATTTTCGTCCTTGCAAATGCAAGCTAACATTAGTTTGAAGTGTGTTACTTTTGGAGGAGGGGGAACAAGAATAGGAAGAGACGGTTTAGCAGCTATAACGCAGTTTCTAATGACGAATGAGACGGTGACGCGGTTTGGGATACATGATGACGAGAGTTTGAGACCGGATGATTTTGTTAAAATCTTTAAGAGTTTAGAGAAGAATGCGAGTTTGAAATGTTTGTCTTTGCAAGGTTGTAAAGGTGTTCAAGGAGAGACATTGCTGGAGACAATTATGGAGACACTTCAGATTAATCCATGGATTGAAGAAGTTGATCTTTCAAGAACACCTTTACATAATTGTGGAAAGACTATTGCAATTTATCAGAGATTAGGGCAGAATGAGAATCCTGAACCAGAAATAGATTTGATCAAAGACATGCCACTGACTGAGCCTAAGAGTTGCAGAGTTTTCTTTTGTGGACAAGAATATGCAGGCAAAACCACACTGTGTCAATCAGTTTCACAAAACTTCTCGGCTTCGCCGGCACTTCCCTACTTGGATCAAGTAAGAACAATAGTGAATCCAGTGGAGCAGGCTGTGAAAACGGTAGGAATGAAGATAAAAACATTCAAGGATGAGGATACAAATATTTCAATATGGAATCTTGCTGGTCAACACGAGTTTTTCTCCCTCCATGATCTTATGTTTCCGGGGCACGGTAGTGCATCGATTTTCATCATCATATCGAGTTTATTCAGGAAGCCGAGTAACAGAGAACCAAAAAGCACTGCAGAGATTGAAGAGGATTTGCAATATTGGCTAAGGTTTATAGTTTCCAACTCCAAAAGAGCAGTGCAACAATGCATGCTACCAAGTGTAGCTGTTGTTCTTACACACTTCGATAAAATCAACCAATCATCGCAAAATCTGCAGCAAACAGTTGATTCGATTCAGAGATTGAGAGACAAGTTTCAAGGCTATGTTGAATTCTACCCAACTGTGTTCACGGTCGATGCAAGATCATCAGCGTCAGTTAGTAAACTCACTCATCACATCCGAAAGACGTGCAAAACAATTCTCCAAAGAGTACCGCGAGTTTATCAACTTTGCAACGATCTAATACAGATTTTATCAGAGTGGAGATCAGAGAATTACAACAAGCCAGCAATGAAGTGGAAGGAGTTTGGTGATCTGTGTCAAGTAAAAGTCCCGTATTTGAGAATACGGTCGAGACATTATAATAAAGAGGCGGTTGAAGTGAAGCGAAAAGCTATCGCTACTTGTCTTCATCACATTGGCGAAGTGATTTATTTTGATGAGTTGGAGTTTCTAATTTTAGATTGTGAGTGGTTCTGCGGTGAAGTACTTGGTCAGCTCTTAAAGTTGAATGTTAAAAAGCAACATACTTCAGAAAACAAAGGATTCATTAGTAGGAAGGAACTGGAGAAAATTTTACGAGGAAGTTTACAAAGTTCAATTCCTGGTATGGGATCAAAGGTATTTGAGAACTTAGAAGCTAGTGATCTTGTCAGAATGATGCTTAAACTTGAACTTTGTTACGAGCAAGATCCATCAGATCAAAATTCTCTATTATTGATTCCCTCCATTCTTGAAGAAGGCAGAGGAAAACCTCAGAGGTGGCAGATAAGCTCACCAGATTGCCTTTATGCCGGACGCCATCTTGAATGTGATGATTCAAGTCACATGTTTCTAACTCCGGGATTCTTCCCTCGTTTACAGGTGCACCTTCACAACAGAATAAAGTCTCTGATGAATCAACATGGTGCAACTTACAGTCTCGAGAAGTACCTCATTTCAATCAGCATTAATGGAATCTACATCAGAGTTGAGCTTGCAGGACAACTCGGTTACTATATCAATATCCTCGCATGCTCCACCAAAAACTTGACAGAAACTTTAAGAGTCGTTCAGCAACTTATAATCCCGGCAATTCAAAGTGTCTGTCATGGGATCACCATGACGGAAAATATCATTAGACCTGAGTGCGTGCGAAATTTGACGCCCCCTAGATACAGAAGAACTCAATTTGCTTCCTTGCAGCAACTGAAACAAGCACTCCTTTCACTTCCGGCGGACAGCATGTATGATTATCAACACACATGGAGTTCGGTAATGGATTCCGGAAGGCCTATTCTCCAAGAAGGGTTTGATTTTGCGCGAGACCTTTTATCGGATGATGACTTCCGAGAAGTGCTTCATCGCAGGTATCATGACCTACACAATCTTGCGCAGGAGCTGCAAATCCCACCTGAAAACAACACTGAAGGGCAAAATCAAGCTATAACCTCAAGCAATGAAGCTGAAAAAGTCGAACCATCCTTTGGTGGCATTGCGAAAGGGGTTGAAGAAGTTTTACAAAGACTAAAAATTATTGAACAGGAAATTAGAGACTTGAAACAGGAAATTCAAGGGATGAGATATTACGAACACAGACTCCTACTTGAGCTTCATCGCAAAGTGAATTACATAGCAACCTTCAATTCTCAAGTTGAGGAGAGGAAAGTACCGAACATGTTCTATTTCGTAAAAGCAGAAAACCACTCAAGGAAACTGATCACCACCGTGGTTTCTGGCATGACCGCTCTTCGTCTTCACATGTTATGTGAGTTCCGGGGACAGATGCATGTTGTTGAAGATCAAATGGGTTGTGAAATGATGCAAGTTGATAACATGGCTGTGAAGGCTTTAGCTCCATACATGAAGAAGTTCATGGTGATGGTTACTTTAGCTCTTAAAATAGGAGCTCATCTTGCAGCTGGAATGGGGCAAATGATACCGGATTTGAGTAAGGAAGTAGCTCATTTGGCTGGCTCTTCACTACTCTTCGGTGCAGCCGGGGCAACAGCAGCTGGTGTTGTAGGCGCTGCTGCTATCGGACGTAGAAACAGGTCTACGGAAGGTTCGAGGGGCATTCAACAAGACATTAAAGCAGCACAACAATGGATGGTTGATTTCTTAAGGGAAAGGAGGTGCTCCACAGGGAAAGATATTGCAGAGAAGTTCGGACTGTGGCGAGTACGGTACAGGGACAATGGTCAGATTGCATGGATCTGTAGGAGGCACATGTACGCCAGATCTGCAGAGATAATTGAAGTGCCTATATAA 4146 0.4062 MMSSNQNLKDLQWFLQAINMENQNLHSISFYLSQPTSSCYQETNNSININISKENHHHFSNLLTSLASSFNNTNSTLRNLEFHRVEWESQQVKSLATLLSNHLTIKQILFKRNRFNGRTMLDLSEILRENKVIKEIMLSESCIGSIGAGLIASSLMVNHSLEELQIWEDSIGSRGAEEISKMIEVNPSLKLLTIFDSNFITATPLISSVLARNRAMEVHVWSGERNGERSSKVVEFVPGNNTLRVYKLNLSGTCRVACSLGMNLTVKSLDMTGVKIKSKCAKEFRWVLEQNQTLKEVNFSRTCLKDKGIVYIAAGLFKNHSLQKLYLTGNLFGGIGVEHLLCPLSRFSSLQMQANISLKCVTFGGGGTRIGRDGLAAITQFLMTNETVTRFGIHDDESLRPDDFVKIFKSLEKNASLKCLSLQGCKGVQGETLLETIMETLQINPWIEEVDLSRTPLHNCGKTIAIYQRLGQNENPEPEIDLIKDMPLTEPKSCRVFFCGQEYAGKTTLCQSVSQNFSASPALPYLDQVRTIVNPVEQAVKTVGMKIKTFKDEDTNISIWNLAGQHEFFSLHDLMFPGHGSASIFIIISSLFRKPSNREPKSTAEIEEDLQYWLRFIVSNSKRAVQQCMLPSVAVVLTHFDKINQSSQNLQQTVDSIQRLRDKFQGYVEFYPTVFTVDARSSASVSKLTHHIRKTCKTILQRVPRVYQLCNDLIQILSEWRSENYNKPAMKWKEFGDLCQVKVPYLRIRSRHYNKEAVEVKRKAIATCLHHIGEVIYFDELEFLILDCEWFCGEVLGQLLKLNVKKQHTSENKGFISRKELEKILRGSLQSSIPGMGSKVFENLEASDLVRMMLKLELCYEQDPSDQNSLLLIPSILEEGRGKPQRWQISSPDCLYAGRHLECDDSSHMFLTPGFFPRLQVHLHNRIKSLMNQHGATYSLEKYLISISINGIYIRVELAGQLGYYINILACSTKNLTETLRVVQQLIIPAIQSVCHGITMTENIIRPECVRNLTPPRYRRTQFASLQQLKQALLSLPADSMYDYQHTWSSVMDSGRPILQEGFDFARDLLSDDDFREVLHRRYHDLHNLAQELQIPPENNTEGQNQAITSSNEAEKVEPSFGGIAKGVEEVLQRLKIIEQEIRDLKQEIQGMRYYEHRLLLELHRKVNYIATFNSQVEERKVPNMFYFVKAENHSRKLITTVVSGMTALRLHMLCEFRGQMHVVEDQMGCEMMQVDNMAVKALAPYMKKFMVMVTLALKIGAHLAAGMGQMIPDLSKEVAHLAGSSLLFGAAGATAAGVVGAAAIGRRNRSTEGSRGIQQDIKAAQQWMVDFLRERRCSTGKDIAEKFGLWRVRYRDNGQIAWICRRHMYARSAEIIEVPI* 1382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3958 1381 Pfam Leucine Rich repeat 290 313 IPR001611 GO:0005515
Psa5g3958 1381 Pfam Leucine Rich repeat 318 340 IPR001611 GO:0005515
Psa5g3958 1381 Pfam C-terminal of Roc, COR, domain 760 929 IPR032171 -
Psa5g3958 1381 Gene3D - 493 699 IPR027417 -
Psa5g3958 1381 SUPERFAMILY RNI-like 247 467 - -
Psa5g3958 1381 SUPERFAMILY RNI-like 68 217 - -
Psa5g3958 1381 Gene3D Ribonuclease Inhibitor 238 355 IPR032675 -
Psa5g3958 1381 Gene3D Ribonuclease Inhibitor 356 476 IPR032675 -
Psa5g3958 1381 Gene3D Ribonuclease Inhibitor 45 219 IPR032675 -
Psa5g3958 1381 Coils Coil 643 663 - -
Psa5g3958 1381 Coils Coil 1128 1148 - -
Psa5g3958 1381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 687 IPR027417 -
Psa5g3958 1381 SMART LRR_RI_2 130 157 - -
Psa5g3958 1381 SMART LRR_RI_2 158 185 - -
Psa5g3958 1381 SMART LRR_RI_2 319 346 - -
Psa5g3958 1381 SMART LRR_RI_2 291 318 - -
Psa5g3958 1381 PANTHER PROTEIN TORNADO 1 2 1374 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3958 - - mtr:MTR_3g055970 2487.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3958 5 311456547 311464481 Psa5g3958 5 311456547 311464481 ECH