Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3908 ATGGATGAAGCTGGTGAGAGCGGAGATCCTATGGATCAGTTCCACCGTAACGAGGCTATATCAGCGGTGGCTGACGATGGTTTTTTAGCGGAAGAGGATGATGATTACGAAGATCTTTACAACGATGTTAATGTTGGCGAGGGTTTTCTTCAATCGTTGCGGAAAAACGATGATTCGGCTGTTAGAAATGATGGTGGTGAGGATAAGAAGGTTCAATCGGGTTCTGTTGTAAAGGATCCGAGTGGGGTTGCGGTGGCTGGTGTCGGTGGTGGTGATGGGAATTTGGGTACTGTTGCTGGAGGGGATGAATCTAGGGTTTCTGGGAGAGTTGATGGGTTTCAGAATCAAGGGTTTAGAGGGGGTAATTCTGGAGTTGGATCGGGTTCGGGGATTGGTGGTGGTGGTGGTGGGATTAGGGTTGAACTAGGTCAAGCATCTGGGAAATTGAGTGAAATTGAAGAGCAGAGAGGCAATGATGGTGTTGGAGTACAGGGGGGTGTGCAGTTGCAACAGCAACAACAACAACATGGTGGTGTTGTTGGAAATGATGGTTTGGTGAGACAAGTTCAAGGTGTTGGTGTTGGTGTTGGTGGTGTTGTTGGAGGGGTTAATCTTAATAGGGTTGGAGGAAATGGAGCTGGGAATAATGTGATTGCTATTAATAGTGTTAATACTGGAGGAGGTGAAGGTGGTGGTGTTGTTGTTGGTGGAGGAGGAGGTGGAGGAAGTACTGTATTATTTGTGGGGGATTTGCATTGGTGGACTACTGATGCTGAGCTGGAAGCTGAGCTTTGCAAGTATGGACAAGTTAAGGAGGTGAGGTTTTTTGATGAGAAAGCTAGTGGAAAATCCAAAGGGTATTGTCAGGTTGAGTTTTATGAAGCATATGCCGCAACGGCTTGTAAGGAAGGGATGAATGGTTATTTGTTTAACGGGAGGCCTTGTGTTGTTGCTTTTGCTTCGCCTTTTACTGTTAAGAAAATGGGAGAGGCTCAGAATAATAGGAATCAGCAGGTGAATCAAGCTGCCGGAGGGGTTAATCAGGGAAGGAGGGGGCCTGCTGATGTGGGGGCTAAACCCGGTGGTAGTAATATTGCGACGGGTGGTAACTACCAAGGTGGAGATGGGAATAATAATAATAATAATAGAGGTTATGGAAGAGGTAATTGGGGGAGAGGGAATAATCCTGGGATGGGGAATAGAGGGCCTGTTAATCCAATGAGGAACAGAGGTGGTGGGATGGGCGGCAGAGGTATTATGGGTAATGGTGGAAATGGATTCGGACAGGGTATTGGTGGTGCCCCGCCGATGATGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGTCCCATGGGTAGAATGGGAGCCTTTGGAGGCTATCCAGGTGGTCCGGCGCCTCCGTTCTCGGGGATGATGCCTTCATTTCCTGGCGTTGGAGGTGTTGGTCTGCCTGGAGTAGCACCTCATGTTAATCCCGCCTTTTTTGGAAGAGGGATGCCTGTGAATGGAATGGGGATGATGCCTGCGTCGGGTATGGAAGGTCCCAATATGGGAATGTGGCCGGATCCAAATATGGGCGGATGGGGTGGTGAAGAACCTGGTGGTGGCAGGGCTGGGGAGTCAAGTTATGGGGAGGAAGCTGCATCAGAGCATCAATATGGTGGTGAGGTGAGTCATGATAGACCTGGGTGGCAGAATACCACGAGGGAAAAAGATAGAGGATCCGAAAGGGACTGGTCTGGTTCTTCTGAGCGAAGGTACAGGGATGATAGAGATCAAGGATATGAGAGAGATGCACCTAGAGAAAAAGAAGTGGGACATGATCCTGAATGGCCAGAAAGAAAGCATCGCGAGGAAAGAGAAGTGGTGGTTAGAGAACGATCCCGTGACCGTGACAGAGAAAAGTCTCGTGATCGTGACCGTGAGCGCGAAAGGGGTGATCGAGATCGTGACAGGGACAGATACAGGGAAGATAGGGACAGATATGCAGATCATCACAGGTATAGAGACCGTGAACCAGAGCATGAGGATGAGTGGGAAAGGGGACGGTCGTCTAGGACTCACAGTAAATCAAGATTATCACAGGATGAGGAACACCATTCTAGGTCAAAAGATGCTGATTATGGGAAGAGGAGGCGGCTGACCTCCGAGTAA 2169 0.4896 MDEAGESGDPMDQFHRNEAISAVADDGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNDDSAVRNDGGEDKKVQSGSVVKDPSGVAVAGVGGGDGNLGTVAGGDESRVSGRVDGFQNQGFRGGNSGVGSGSGIGGGGGGIRVELGQASGKLSEIEEQRGNDGVGVQGGVQLQQQQQQHGGVVGNDGLVRQVQGVGVGVGGVVGGVNLNRVGGNGAGNNVIAINSVNTGGGEGGGVVVGGGGGGGSTVLFVGDLHWWTTDAELEAELCKYGQVKEVRFFDEKASGKSKGYCQVEFYEAYAATACKEGMNGYLFNGRPCVVAFASPFTVKKMGEAQNNRNQQVNQAAGGVNQGRRGPADVGAKPGGSNIATGGNYQGGDGNNNNNNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGIGGAPPMMHPQSMMNQGFDPAFGGPMGRMGAFGGYPGGPAPPFSGMMPSFPGVGGVGLPGVAPHVNPAFFGRGMPVNGMGMMPASGMEGPNMGMWPDPNMGGWGGEEPGGGRAGESSYGEEAASEHQYGGEVSHDRPGWQNTTREKDRGSERDWSGSSERRYRDDRDQGYERDAPREKEVGHDPEWPERKHREEREVVVRERSRDRDREKSRDRDRERERGDRDRDRDRYREDRDRYADHHRYRDREPEHEDEWERGRSSRTHSKSRLSQDEEHHSRSKDADYGKRRRLTSE* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3908 722 MobiDBLite consensus disorder prediction 53 82 - -
Psa5g3908 722 MobiDBLite consensus disorder prediction 342 378 - -
Psa5g3908 722 MobiDBLite consensus disorder prediction 537 722 - -
Psa5g3908 722 MobiDBLite consensus disorder prediction 557 722 - -
Psa5g3908 722 SMART rrm1_1 245 318 IPR000504 GO:0003723
Psa5g3908 722 CDD RRM_CFIm68_CFIm59 246 319 - -
Psa5g3908 722 MobiDBLite consensus disorder prediction 57 74 - -
Psa5g3908 722 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 246 315 IPR000504 GO:0003723
Psa5g3908 722 SUPERFAMILY RNA-binding domain, RBD 242 351 IPR035979 GO:0003676
Psa5g3908 722 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 6 721 IPR034772 -
Psa5g3908 722 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 244 322 IPR000504 GO:0003723
Psa5g3908 722 Gene3D - 240 356 IPR012677 -
Psa5g3908 722 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 6-LIKE 6 721 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3908 Psa-Chr5 308471627 308476842 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3908 K14398 - gmx:100813702 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3908 5 308471627 308476842 Psa5g3908 5 308471627 308476842 ECH