Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3879 ATGTCAGTGGCAGCTAGTCCAGCACCTCCTTTAGGAGACCATTTGTGTGAAAATGGATTTGAATGTGTTGAAATTCTCCCTGCCACCAATGATGCACATGGAGGAGTCATTGTTGACTTGAAAGATAGGATGGATCCCGAAGTTTTCGCTTCTTTGCTTAAATCTTCGCTTTCGAATTGGAAGAAACAGGGAAAAGATGGCGTGTGGATCAAGTTACCTATTGAGCTTGTTAATCTTGTTGAAATTGCAGTTAAGGAAGGTTTCTGGTACCACCATGCTGAGCCAAGCTATGTAATGCTAGTTAACTGGATTTCCAAAACAGGCTGCACAATCCCTCCAAACGCTTCTCATCGCGTAAGAGTCGGCGCCATTGTCTTGAATGATAAGAAAGAGGTGCTAGTTGTAAAGGAAAAAAGAGGTAGATTCCATGGAATTGGTGCTTGGAAGCTTCCTACGGGAGTAGTTGATGCAGGTGAGGAGATCTTTGAAGCCGCAATTAGAGAAGTAAAAGAAGAGACAGGAATTGATACAGAATTTGTGGAGGTACTAGGATTCAGACAGGAACATAATTCATTCTTTGAGAAATCAGACATATCATTTCTTTGCATGTTGCATCCTCTTTCTTTTGACATCAAAAAGCAAGAACTTGAAATTGAAGCAGCTCAGTGGATGCCATTTGAAGAATATGCAGCACAACCATTTAATCAGAAGCATGAGCCCTTCAAGTACATAAATGAATTATGCATAGCAAAGATGGAAAATGTGTATACTGGATTTTGTCCACGTCTTGTCTCATCATTTTTCTCTAAGGATTTTAGTTATATATACTTGAACACCAAGGACTTAGACAAGTCTTCTTCATGA 864 0.3993 MSVAASPAPPLGDHLCENGFECVEILPATNDAHGGVIVDLKDRMDPEVFASLLKSSLSNWKKQGKDGVWIKLPIELVNLVEIAVKEGFWYHHAEPSYVMLVNWISKTGCTIPPNASHRVRVGAIVLNDKKEVLVVKEKRGRFHGIGAWKLPTGVVDAGEEIFEAAIREVKEETGIDTEFVEVLGFRQEHNSFFEKSDISFLCMLHPLSFDIKKQELEIEAAQWMPFEEYAAQPFNQKHEPFKYINELCIAKMENVYTGFCPRLVSSFFSKDFSYIYLNTKDLDKSSS* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3879 287 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 118 257 - -
Psa5g3879 287 CDD Nudix_Hydrolase_12 117 248 - -
Psa5g3879 287 PRINTS NUDIX hydrolase family signature 148 162 IPR020476 -
Psa5g3879 287 PRINTS NUDIX hydrolase family signature 162 177 IPR020476 -
Psa5g3879 287 ProSiteProfiles Nudix hydrolase domain profile. 116 248 IPR000086 -
Psa5g3879 287 SUPERFAMILY Nudix 84 245 IPR015797 -
Psa5g3879 287 Pfam NUDIX domain 117 241 IPR000086 -
Psa5g3879 287 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 76 94 IPR003293 -
Psa5g3879 287 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 114 132 IPR003293 -
Psa5g3879 287 PRINTS Anti-sense to fibroblast growth factor protein GFG signature 202 226 IPR003293 -
Psa5g3879 287 Gene3D - 15 108 - -
Psa5g3879 287 PANTHER NUDIX HYDROLASE RELATED 20 285 IPR003293 -
Psa5g3879 287 ProSitePatterns Nudix box signature. 153 174 IPR020084 GO:0016787
Psa5g3879 287 Pfam Nudix hydrolase domain 26 104 IPR040618 -
Psa5g3879 287 PANTHER NUDIX HYDROLASE 2 20 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3879 Psa-Chr5 306619565 306622313 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3879 - - gmx:100783941 465.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3879 5 306619565 306622313 Psa5g3879 5 306619565 306622313 ECH