Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3873 ATGCATGATAGTGAGTGCTCAGACATTTCTAAATTAAATGATGTCAGGGACCTACCATCTGTCAACATGGCAGACATTTTGTTCACTGAGCGAATGAAAAATAAGTTCAGTGAGTGGCGTGATGGATTATTAATGGAGCAAAGTCAATCAGACCAAATTCAAGGATCTCGAAAAGTCTTGAAACAACGATTTGAAGTGATTTTCTTTAAGACGCGTCCAGCTCTCAAGCTTGAAGGATTCACCTCACGTCAGCTTAAGTTAATTCAGTTGGTCATCAAAAAACACTTCAAAGATCTTTCTTATATCAACGTGAACAATGCGGGTTCTAGTTCCCAACAAATAGTTGTATATACAGACTCGGAGGATGAACTAAACTTACTTCTGAAGGAGGTAAAAGAGGAAAATCACAGGGCCAAAAAGACGAAGATCCAAGCTGCAGTCGGATTTCGCCATGTTATTGATCTCCTTTCGTCAGAACAGAAGTTGATAGTTGGTCATAACTGTCTTCTAGATATTGCTCATGTGTACAACAAATTTATTGGTCCTCTTCCTGGGACTCCTGAAGAGTTTGTTGTCTCTATTAACAAGTGCTTTCCACATATTATTGACACCAAAGTACTCATGAACACTGATTATATACTCCAAGCAAGAATGAAAAAGTCCAGAAATTCACTGGGCTCTGCATTTTCTGTGTTTTGTCCACAAATTGCTGCAGGCTCCAAAAGCACTGAGCTAGTTTCACCATCCCATGTAAAAGTAGATGTTGAAGTTGATGATTCAAGATCGTCTAGCTGGAACCCTGGAGGCAAGCATGAGGCAGGATATGATGCTTTCATGACTGGATGCATCTTTGCCCAGTTATGCAGTGATTTAGGAGTTGATTTTAAACTCCATGAATCTTTAAAATTAGCTTCCAATGAGAAACTACAGAAATACATTAATCATCTATATCTTAGTTGGATGCATGGGGATATTATTGATCTAAGTACAGGTGATAAGGTTTCAAATTCTTCACCAAGCTATAGCCCCAAAAGACGCCACCCAAATATTTTGTTTGAGAACATAGTTATTATATGGGGATTTCCTTCTAACGTGAAATCAAGCGATGTACGAGAGTGTATATCTAAAGTTTTTGGTCTAACTTCTGTAGTTTCTGTATACCAAATGGATGCAACTGCAGTGTTCGTTCAGTTTAGCAAGACTGAACTAGTTTCCGACTTTCTTTTATTGAAGGAAAAATTAGAGAGAAGTAATGGTCCAATCTTGGTTTTGCATCCGTTGTCAAAACTTTTGGATGGTGGAAATACATGTGCTGCTAATTATGATACTTATAAAGAAATATGTGGTTCACCCTTGTCACAAGATTTATTTGCTGATCAGGCAAATGCAGTTACCATGATGCTGAAGACTAAGTTGATTGAATTTAAGGTAGCGTTGAGGAGTAAAGAACATGAAAATCCAAGTGTACAAGATAATGTAAATGATGTTGCCATGAATTTTGTAGAAAAAATCAAGCCAAACTCAATTGATCAGTTAAGTAATGTTCAATCTACTGGGCAAGCCTCCCCATTTGAGATTGAAGATTCGGGTGTCGCCGAAGCTAACTTGTGA 1611 0.3793 MHDSECSDISKLNDVRDLPSVNMADILFTERMKNKFSEWRDGLLMEQSQSDQIQGSRKVLKQRFEVIFFKTRPALKLEGFTSRQLKLIQLVIKKHFKDLSYINVNNAGSSSQQIVVYTDSEDELNLLLKEVKEENHRAKKTKIQAAVGFRHVIDLLSSEQKLIVGHNCLLDIAHVYNKFIGPLPGTPEEFVVSINKCFPHIIDTKVLMNTDYILQARMKKSRNSLGSAFSVFCPQIAAGSKSTELVSPSHVKVDVEVDDSRSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGVDFKLHESLKLASNEKLQKYINHLYLSWMHGDIIDLSTGDKVSNSSPSYSPKRRHPNILFENIVIIWGFPSNVKSSDVRECISKVFGLTSVVSVYQMDATAVFVQFSKTELVSDFLLLKEKLERSNGPILVLHPLSKLLDGGNTCAANYDTYKEICGSPLSQDLFADQANAVTMMLKTKLIEFKVALRSKEHENPSVQDNVNDVAMNFVEKIKPNSIDQLSNVQSTGQASPFEIEDSGVAEANL* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3873 536 SUPERFAMILY Ribonuclease H-like 133 295 IPR012337 -
Psa5g3873 536 PANTHER POLY(A)-SPECIFIC RIBONUCLEASE PNLDC1 19 469 - -
Psa5g3873 536 Coils Coil 117 144 - -
Psa5g3873 536 Gene3D - 109 333 IPR036397 GO:0003676
Psa5g3873 536 Pfam CAF1 family ribonuclease 111 284 IPR006941 -
Psa5g3873 536 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 19 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3873 Psa-Chr5 306394320 306399685 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3873 K01148 - gmx:100784997 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3873 5 306394320 306399685 Psa5g3873 5 306394320 306399685 ECH