Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3857 ATGGTGTATGGTTACCAAATTCATAAGCATAATAATGAATTTTTAAGAGTTTTGTGTTTTTCTTTTACTGTGACTATCCTACAGGAAAAGGGTCCTCCACTACCCAAATTCGGTGAATGGGATGTCAACGATCCAGCCTCAGCTGAGGGGTTCACAGTGATTTTTAATAAGGCAAGGGATGAGAAAAAGACAGGTGGCAATACCGAGTCACCAGGAAAGACTACTACTGAACCTCAAAGCAAACCTGCATCAGATCCCGGCAAACCTCAGAGTAAAAAATGGTTTTGCTGCATTCAAAACCCTCCTGCAGAATCATAA 318 0.4119 MVYGYQIHKHNNEFLRVLCFSFTVTILQEKGPPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGNTESPGKTTTEPQSKPASDPGKPQSKKWFCCIQNPPAES* 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3857 105 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 29 64 IPR008700 -
Psa5g3857 105 MobiDBLite consensus disorder prediction 68 86 - -
Psa5g3857 105 PANTHER RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN 28 98 IPR040387 -
Psa5g3857 105 MobiDBLite consensus disorder prediction 56 105 - -
Psa5g3857 105 PANTHER PROTEIN NOI4 28 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3857 Psa-Chr5 304064944 304067094 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3857 - - gmx:100305826 147.902
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3857 5 304064944 304067094 Psa5g3857 5 304064944 304067094 ECH