Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3842 ATGCCACAGGAGGTGTCTCAATCACACAACTCATTTTTCTCATCTCCTTCAAAAAGAGGATTGAAAGGTATAGTTTCTATGAACTTCACAGAGGAAGAGAGTTTCAACGATTACGATTTGGCTCACAGAAAAGCAGAAGAAGCAGCTTCAAGGCGATACGAAGCCTCAGAATGGCTACGTCAAATGGACACTGTTGCATCTTCATTCTTGCCTCCAAAACCGTCGCAACAGCAATTCTACCTCGCGCTTCGCAACGGTATCATTCTCTGCAACGTCCTCAACAGAGTCAATCCCGGTGCCGTTGTCAAAGTTGTCGACAATTCTGCACTTGCTGCTGCTGCTACTGTAGAAGGAGCAGCGCATTCCGCGATTCAGTATTTTGAGAATATGAGGAACTTTCTTTATGCGGTTAAGGATATGCAATTATTGACTTTTGAAGCTTCTGATTTAGAGAAGGGGGGTTCGTCAAATAAAGTTGTGGACTGCATTCTATGTTTGAAGGGATACTATGAATGGAAACTATCCGGTGGAGTTGGTGTGTGGAGGTATGGCGGAACTGTGAGAATTACTTCCTTACCAAAGAGGTCTCCTTCTTCTTCCATAGTTGGCAGTGAAAGTGCTGATGATTCACTGGATGAGTCCGAGTCATCGCAGTATGAACATCTGCTAGAATTTCTTACCCTATCTGAAGAGTTCTTGAATGAAGAAACCAAAACTACCAATGTTCTTGCTTTCCTTTTTGATCACTTTGGACTCAGACTTCTTCAGGCTTATATTACAGAGACAGATGGGATTGATGATCTGCCTCTGAATACAATGGTAATTGATGCCTTACTCAGCAAGGTAGTCAAAGATTTCTCATCTTTGCTCGTTTCTCAAGGCACTGAGCTTGGACTTTTCCTGAAGAAAATATTAAAAGGGGATATTGGTTGTCTCTCAAAGAGGGAGTTTGTAGAAGCTATCTCACTATATCTTAATCAAAGAAGTAGTTTGGCATCAAATGATTTCTCCAAATTTTGCATTTGTGGTGGCAAGCGTGATATTCTTCGACAAAACGTCAATTACTCTGCCAAATATTCTGAAGTTATCAATACTCAACAGAAACAACTTGAGACGGTGAAATACTTCTTTGAAGATACAAAACTTGAAGTCAAGCAAATTCAATCAGAGTGGGAACAAGAATTTAGTAGGCTAGAGCATCATATTAAGAGCCTTGAAGTGGCCTCCTCTTCTTACCACAAAGTCTTGGAAGAGAACCGTTTTCTTTACAACCAAGTACAAGACCTCAAAGGGGCCATTAGGGTCTACTGTAGAGTGAGACCCTTCTTACCGGGACAATCAAATGGGCAGTCTACAGTAGACTATATTGGAGAAAATGGAGACATGATGATTGTGAATCCCCTCAAGCAAGGAAAAGATGCAAGAAGGGTATTTTCATTCGATAAGGTGTTTGGAACAAGTGTAACACAAGAACAAATTTATGCTGACACTCAACCATTGATCAGATCTGTTTTAGATGGTTATAATGTATGTGTCTTTGCATATGGACAGACCGGTTCAGGGAAGACCTACACAATGAGTGGTCCTGATCTGTCTGCTGAGGAGACATGGGGTGTAAACTATAGGGCTTTGCGTGATTTATTTTATATATCAAAGGAAAGATCAGATTCCATAAAATATGAAGTTTTCGTCCAGATGATTGAAATATACAATGAACAAGTGAGAGATTTATTAGTCAGTGATGGCTCTAACAGAAGATTAGATGTACGGAACACTTCCCAGCTGAATGGTCTCAATGTGCCTGATGCATTTTTAGTTCCAGTTACTTGCACTCGAGATGTTCTAAATTTAATGAGAATTGGTCAGAAAAACCGTGCTGTAGGTGCTACAGCTCTAAATGAGAGAAGCAGTCGTTCTCATAGTGTTTTGACTGTTCATGTTCGAGGCAGGGAGTTAGTTTCTAACTCCATTCTTAGGGGTTGTCTCCATCTCGTGGATTTGGCTGGTAGTGAGAGAGTTGACAAATCTGAGGCTGTTGGTGAAAGATTAAAGGAAGCCCAACATATAAATAGATCACTTTCAGCACTTGGGGATGTCATTTCTGCTTTGGCACAGAAAAGTCTACATATCCCTTACCGAAACAGCAAGCTCACACAAGTATTACAAGATTCTTTAGGAGGGCATGCAAAAACTTTGATGTTTGTTCATATTAATCCCGAACTTAATGCTATTGGGGAGACGATTAGCACACTCAAGTTTGCTGAGAGGGTTGCATCCATTGAACTTGGGGCTGCTCAATCTAATAAAGAAACTGGAGAAATTCGAGAACTGAAGGAAGAGATATCAAGTCTCAAATTAGCATTGGAAAGAAAAGAAACAGAGCTGGAGCAGTGGAAAGCTGGGAATACTCGAAATGCTACAGAGTCTCCAAAACCAAGAGCTATTTCACCTTATCACTTACCCAAATATGGCACTAGTGGCAGCATTAAGCCTGAAACTAGTCAAAGACTCATGGATGATAGAAACTTTGAGGCTAGAAGTTGCTCTTCGGGAAAGCAAAGAAGGTCAAGGTTTCCCTCAGCATTAATGGACAAGGAGTCCATACCAAAAATGTCGCTTCTCACTGAAGAAAAATTAGCCAGCTCAGCAAAAGGAAGATCACCATCACCTCCAGTTAGAAGATCAACATCTACCGACAGAGGATCAGTCATTAAAAGCAAGTTAAAAAGTGACACAGCAGATAACCAACCAGTATTAAAGCATCCATTTCCAGCTAGAGTACCTGTTAACAAATTTCTTGTCACAATGCCAATGGCTACAACCCTTGAGAATAATGCAAGGTTGCATATGAATTCACCAGAGCCAGTAAAACATGAAGAGGAACAATTCAAGCAAGCACTAAGTGCTGTAAGACAAGGCGGTATTAGGAAAAGCAAGGTTGAAACTAAGGCTAAGACCAAACCTAATCTATCATCTCCCTTTAAGATTCAAAAGCCTGAGTTGATCCCGTTGTTTACTGCTGGCATCGAATATGCTGGTGAGAAGACAGTGGAGACACCTCCAAAGAGTGATCACTCTGAGCCCGAAAATGATCTTAGGTTTGTTGAGTCTGGCGTTCGTGGTTCTTTAAATCAAAATAAGATACGTCAAAACTTTTCAAGGAATTTTCAGTACCTGGAATCAAGAGGAATAGTGCAAGCAGAAGAGCCTTTATCAGCTAGAAAAGTTGAAAACAAACTTTTGAATAGTTCAGGTAGTAATCATAACGAAGGAAATAATACATCCATGCCTGAATTTAGAAGGAGCCGATCTACCCCACGCAGAAAGTTTTTTGGTTTATCGTGA 3345 0.4063 MPQEVSQSHNSFFSSPSKRGLKGIVSMNFTEEESFNDYDLAHRKAEEAASRRYEASEWLRQMDTVASSFLPPKPSQQQFYLALRNGIILCNVLNRVNPGAVVKVVDNSALAAAATVEGAAHSAIQYFENMRNFLYAVKDMQLLTFEASDLEKGGSSNKVVDCILCLKGYYEWKLSGGVGVWRYGGTVRITSLPKRSPSSSIVGSESADDSLDESESSQYEHLLEFLTLSEEFLNEETKTTNVLAFLFDHFGLRLLQAYITETDGIDDLPLNTMVIDALLSKVVKDFSSLLVSQGTELGLFLKKILKGDIGCLSKREFVEAISLYLNQRSSLASNDFSKFCICGGKRDILRQNVNYSAKYSEVINTQQKQLETVKYFFEDTKLEVKQIQSEWEQEFSRLEHHIKSLEVASSSYHKVLEENRFLYNQVQDLKGAIRVYCRVRPFLPGQSNGQSTVDYIGENGDMMIVNPLKQGKDARRVFSFDKVFGTSVTQEQIYADTQPLIRSVLDGYNVCVFAYGQTGSGKTYTMSGPDLSAEETWGVNYRALRDLFYISKERSDSIKYEVFVQMIEIYNEQVRDLLVSDGSNRRLDVRNTSQLNGLNVPDAFLVPVTCTRDVLNLMRIGQKNRAVGATALNERSSRSHSVLTVHVRGRELVSNSILRGCLHLVDLAGSERVDKSEAVGERLKEAQHINRSLSALGDVISALAQKSLHIPYRNSKLTQVLQDSLGGHAKTLMFVHINPELNAIGETISTLKFAERVASIELGAAQSNKETGEIRELKEEISSLKLALERKETELEQWKAGNTRNATESPKPRAISPYHLPKYGTSGSIKPETSQRLMDDRNFEARSCSSGKQRRSRFPSALMDKESIPKMSLLTEEKLASSAKGRSPSPPVRRSTSTDRGSVIKSKLKSDTADNQPVLKHPFPARVPVNKFLVTMPMATTLENNARLHMNSPEPVKHEEEQFKQALSAVRQGGIRKSKVETKAKTKPNLSSPFKIQKPELIPLFTAGIEYAGEKTVETPPKSDHSEPENDLRFVESGVRGSLNQNKIRQNFSRNFQYLESRGIVQAEEPLSARKVENKLLNSSGSNHNEGNNTSMPEFRRSRSTPRRKFFGLS* 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3842 1114 Gene3D Kinesin motor domain 375 762 IPR036961 -
Psa5g3842 1114 MobiDBLite consensus disorder prediction 834 851 - -
Psa5g3842 1114 PANTHER HEAVY CHAIN, PUTATIVE-RELATED 30 1109 - -
Psa5g3842 1114 Coils Coil 767 801 - -
Psa5g3842 1114 SMART kinesin_4 430 768 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa5g3842 1114 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 797 IPR027417 -
Psa5g3842 1114 ProSiteProfiles Kinesin motor domain profile. 432 760 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa5g3842 1114 Pfam Calponin homology (CH) domain 52 171 IPR001715 GO:0005515
Psa5g3842 1114 SMART ch_5 51 169 IPR001715 GO:0005515
Psa5g3842 1114 PRINTS Kinesin heavy chain signature 507 528 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa5g3842 1114 PRINTS Kinesin heavy chain signature 630 647 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa5g3842 1114 PRINTS Kinesin heavy chain signature 661 679 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa5g3842 1114 PRINTS Kinesin heavy chain signature 710 731 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa5g3842 1114 Pfam Kinesin motor domain 438 760 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Psa5g3842 1114 Gene3D - 40 171 IPR036872 -
Psa5g3842 1114 MobiDBLite consensus disorder prediction 1082 1100 - -
Psa5g3842 1114 PANTHER KINESIN-LIKE PROTEIN KLP-3 30 1109 - -
Psa5g3842 1114 SUPERFAMILY Calponin-homology domain, CH-domain 43 199 IPR036872 -
Psa5g3842 1114 MobiDBLite consensus disorder prediction 888 913 - -
Psa5g3842 1114 ProSiteProfiles Calponin homology (CH) domain profile. 49 171 IPR001715 GO:0005515
Psa5g3842 1114 MobiDBLite consensus disorder prediction 1082 1114 - -
Psa5g3842 1114 MobiDBLite consensus disorder prediction 797 921 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3842 Psa-Chr5 302776421 302785206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3842 423 760 Calmodulin-binding Proteins AT5G65930 42.442 3.21e-74 267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3842 5 302776421 302785206 Psa2g0138 2 5179440 5184940 PCT