Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3794 ATGGAGGAAAAATACTCATTTAAGAATCTTCATAGCCGAGAATATTCCGGTCACAAGAAGAAGGTGCACTCTGTGGCTTGGAATTGCATTGGCACAAAACTTGCTTCTGGTTCTGTTGATCAAACTGCTCGAATCTGGCATATTGAACCACATCATGGCCATGGTAAAGTTAAAGATATTGAATTGAAGGGTCACACTGATAGTGTGGATCAGCTATGCTGGGACCCCAAACATCCCGATCTTATTGCAACTGCATCGGGTGACAAGACTGTTCGTCTCTGGGATGCTCGAAGTGGAAAATGCTCACAACAAGCAGAACTTAGTGGGGAGAACATCAACATCACCTACAAACCTGATGGTACTCATGTAGCAGTAGGTAATAGGGATGATGAATTAACAATACTTGATGTTCGGAAATTCAAACCAATTCATAGGCGCAAGTTCAACTATGAGGTAAATGAGATTGCTTGGAATATGACCGGCGAGATGTTTTTTTTAACAACGGGAAATGGGACTGTGGAAGTATTGTCTTATCCATCTCTTCGGCCTCTTGATACCCTCATGGCTCATACAGCTGGTTGTTATTGCATTGCAATTGACTCAACTGGAAGACATTTCGCAGTTGGAAGTGCCGATTCCCTTGTCAGCTTATGGGTTATCTCAGAGATGCTTTGTGTGCGTACCTTTACAAAGCTCGAATGGCCGGTCCGTACAATTAGTTTCAATCATACCGGGGACTTGATTGCTTCAGCAAGTGAAGACTTGTTCATTGATATTTCAAATGTTCATACTGGAAAAACAGTACATCATATTCCATGTAGAGCCGCGATGAACAGTGTTGAGTGGAATCCTAAATACAATGTACTTGCGTATGCCGGTGATGACAAAAACAAGTATCAGGCTGACGAAGGTGTTTTTCGAATTTTTGGGTTTGAAAATGCTTAG 945 0.4201 MEEKYSFKNLHSREYSGHKKKVHSVAWNCIGTKLASGSVDQTARIWHIEPHHGHGKVKDIELKGHTDSVDQLCWDPKHPDLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHVAVGNRDDELTILDVRKFKPIHRRKFNYEVNEIAWNMTGEMFFLTTGNGTVEVLSYPSLRPLDTLMAHTAGCYCIAIDSTGRHFAVGSADSLVSLWVISEMLCVRTFTKLEWPVRTISFNHTGDLIASASEDLFIDISNVHTGKTVHHIPCRAAMNSVEWNPKYNVLAYAGDDKNKYQADEGVFRIFGFENA* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3794 314 Gene3D - 58 149 IPR015943 GO:0005515
Psa5g3794 314 SUPERFAMILY WD40 repeat-like 11 296 IPR036322 GO:0005515
Psa5g3794 314 Gene3D - 150 310 IPR015943 GO:0005515
Psa5g3794 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 62 104 IPR001680 GO:0005515
Psa5g3794 314 PANTHER THO COMPLEX SUBUNIT 3 THO3 4 313 IPR040132 GO:0006406
Psa5g3794 314 Pfam Anaphase-promoting complex subunit 4 WD40 domain 232 283 IPR024977 -
Psa5g3794 314 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 15 49 - -
Psa5g3794 314 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 62 100 - -
Psa5g3794 314 PRINTS G protein beta WD-40 repeat signature 34 48 IPR020472 -
Psa5g3794 314 PRINTS G protein beta WD-40 repeat signature 82 96 IPR020472 -
Psa5g3794 314 PRINTS G protein beta WD-40 repeat signature 206 220 IPR020472 -
Psa5g3794 314 Pfam WD domain, G-beta repeat 183 218 IPR001680 GO:0005515
Psa5g3794 314 Pfam WD domain, G-beta repeat 12 46 IPR001680 GO:0005515
Psa5g3794 314 Pfam WD domain, G-beta repeat 61 95 IPR001680 GO:0005515
Psa5g3794 314 ProSitePatterns Trp-Asp (WD) repeats signature. 82 96 IPR019775 -
Psa5g3794 314 Gene3D - 8 57 IPR015943 GO:0005515
Psa5g3794 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Psa5g3794 314 ProSiteProfiles Trp-Asp (WD) repeats profile. 15 49 IPR001680 GO:0005515
Psa5g3794 314 SMART WD40_4 8 47 IPR001680 GO:0005515
Psa5g3794 314 SMART WD40_4 222 261 IPR001680 GO:0005515
Psa5g3794 314 SMART WD40_4 139 177 IPR001680 GO:0005515
Psa5g3794 314 SMART WD40_4 180 219 IPR001680 GO:0005515
Psa5g3794 314 SMART WD40_4 55 95 IPR001680 GO:0005515
Psa5g3794 314 SMART WD40_4 264 302 IPR001680 GO:0005515
Psa5g3794 314 CDD WD40 11 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3794 Psa-Chr5 299253953 299259283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3794 152 310 Miscellaneous Gene Families AT5G08390 21.875 9.79e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3794 K12880 - gmx:100812126 617.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3794 5 299253953 299259283 Psa5g3794 5 299253953 299259283 ECH