Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3293 ATGCTAAAATCAGCATTCACCCCCATTTACTGGGTGCTATCGCCCAAACCAAAATCACCAAAAATATCACAACATTTCATCACAAACACCTTTTCAAACAGCACACCACATGTTCGACAAAATTCCTCTTCCAAACAGAACCTCACCATCACCCCTTCTTCAGCTTACATTCACCTTCCTTTCTGTAGAAAACGTTGCCACTACTGTGACTTCCCCATTGTCGCCCTTGGCTCTGCTTCAACCCAAACACACGACGACCCGCGTGTCATAAACTACATACAATGGCTATGCAGAGAAATCAACGCAACCAAAGTAGAAGAAAACCTCGATTCCGAGACGCCCCTTCAAACGGTCTTTTTTGGAGGTGGGACACCCTCTCTGGTTCCTCCTAGTATGGTTTCCTCGGTTTTGGAGACACTGAAGATGAAATTTGGGTTGAGTGAAAGTGCTGAAATTTCAATGGAAATGGACCCGGGTACGTTTGATTATAGGAAGATGCAAGATATGATGTTGTTGGGAGTGAACAGAGTTTCTTTGGGAGTTCAAGCGTTTCAGGAGAAGCTTTTGAAGAGTTGTGGCAGGGCACATGGTTTGGAAGAGGTTCACGAGGCTATTGATATTGTCAAGAAATGTGGGGTTGAGAATTGGAGTATTGATCTTATTGCTTCACTGCCTCATCAGACTAGTGACATGTGGGAGGAAAGTCTAAGACTCGCCATTGAGGCACAGCCAACTCATGTTTCTGTTTATGATTTGCAAATTGAACAAGGCACAAAATTTGGAAGACTATATGCACCGGGGGAATTTCCACTGCCTTCTGAGACACAATCAGCTGATTTCTATAAGATGGCTTCAAGGATGCTTTGTGATGCAAGTTATAATCATTACGAAATCAGCAGCTACTGTAAGAAGGGGTATGAATGCAGACACAACTTTACATATTGGAAGAACAAGCCTTTCTATGCCTTTGGCCTTGGCTCTACTAGCTTTGTTGGCGGGTTAAGGTTTGCAAGACCCAGGAAGTTGAACGAGTACATGAAATTTGTGGAAAATCTGGAAAATGGATCAGTAAATAGCTCATCTGATGATGACGTTAATACCAAGGACACTGCTCTGGATGTTGTGATGCTGTCCCTGAGAACTGCAAGAGGTCTAGATTTGAAGCGTTTCCAAGAATCATTTGGCAGCTCTCTGGTTTATTCTCTGTTTGAGGTTTATAAACCTTATGTTGAGAGTGGACACATGGTTTTCTTGGACGTGCAAAGGAGAGCCATTAGAATAGAGGACATCAACAATTCTCTTTTGTATGATATTAACTCAGAAAGGAGAGTGGCCTATATGAGGCTAAGTGATCCAAATGGTTTCCTTTTATCAAACGAGTTAATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAAGGATTATCCTTCTGCACTACAAGAAGCTACTTGA 1452 0.4256 MLKSAFTPIYWVLSPKPKSPKISQHFITNTFSNSTPHVRQNSSSKQNLTITPSSAYIHLPFCRKRCHYCDFPIVALGSASTQTHDDPRVINYIQWLCREINATKVEENLDSETPLQTVFFGGGTPSLVPPSMVSSVLETLKMKFGLSESAEISMEMDPGTFDYRKMQDMMLLGVNRVSLGVQAFQEKLLKSCGRAHGLEEVHEAIDIVKKCGVENWSIDLIASLPHQTSDMWEESLRLAIEAQPTHVSVYDLQIEQGTKFGRLYAPGEFPLPSETQSADFYKMASRMLCDASYNHYEISSYCKKGYECRHNFTYWKNKPFYAFGLGSTSFVGGLRFARPRKLNEYMKFVENLENGSVNSSSDDDVNTKDTALDVVMLSLRTARGLDLKRFQESFGSSLVYSLFEVYKPYVESGHMVFLDVQRRAIRIEDINNSLLYDINSERRVAYMRLSDPNGFLLSNELIALAFGVIDSWKDYPSALQEAT* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3293 483 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 39 468 - -
Psa5g3293 483 SMART MiaB 52 283 IPR006638 GO:0003824|GO:0051536
Psa5g3293 483 Pfam Radical SAM superfamily 57 238 IPR007197 GO:0003824|GO:0051536
Psa5g3293 483 PANTHER COPROPORPHYRINIGEN III OXIDASE 39 468 IPR034505 -
Psa5g3293 483 SUPERFAMILY Radical SAM enzymes 52 416 - -
Psa5g3293 483 Gene3D tm_1862 like domain 60 275 IPR023404 -
Psa5g3293 483 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 54 411 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Psa5g3293 483 SFLD HemN-like, clustered with heat shock genes 52 416 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Psa5g3293 483 SFLD Radical SAM 52 416 IPR007197 GO:0003824|GO:0051536
Psa5g3293 483 ProSiteProfiles Radical SAM core domain profile. 47 294 IPR007197 GO:0003824|GO:0051536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3293 - K07739 gmx:100779022 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3293 5 256982030 256985548 Psa5g3293 5 256982030 256985548 ECH