Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3183 ATGAGTGAGGATCTGAAGAAAACTGGTTCTGTTGGCCATGAGAAAATGTCACAAGAGCAACAGGCAAAGATCATTGAGGTGAGAAAGCTGATAGGAATATTATCAGAAAAGGAAACTGTGTATTGTACTGATGCAACCATTTCAAGGTACTTAAAATCGCAGAATTGGAATGTCAAGAAAGCGTCTCAAATGTTGAAGCAAAGCCTGAAATGGAGACGGGAGTACAAACCCGAAGAGATTCGCTGGGACGAGGTTTCTAATGAAGCAGAGATAGGGAAAATGTATAGAGCAAATTATTGTGACAAGCATGGAAGGCCGGTGATTATAATGAGAACAGATCGCGAGAATTCGAAGTCGTTGAAAGAAGAGATTAAGCATTTTGTTTACTGCATGGAGAATGCAGTTTTAAATCTACCACCTCTCCAGGAACAGGTGGTCTGGCTTGTTGATTTTCATGGCTTCAATTTATCAAATGTATCGTTCAAGATAACACGCGAAATTAGCCATATATTACAAAAGTACTATCCACAGCGCCTCGGATTGGCAATCATGTATGATGCACCTGGGATTTTCCAGCCATTCTTCGCGATGGTAAAGGTTCTGCTTGAGTCTGAGAGTTATAAAAAGGTAAAGTTTGTTTATTCTAACGACCAAAACACAAAGAAGATTATGGAGGGTTTGTTCGATATGGATCAACTTGAACCTGCATTTGGTGGGAACAACGACACGGAATTTGACATGAATAAATATGCTAAGAGAATGAAAGAGGAAGATAACAAGATGCACTCGTTATGGACACGGACAAACTCGCTATCATTGGTCTCGCGCAATATTCCTTCTTCTGATTCAACTGGGTCAGAAGCAGATTCTGATGCTTCCAACAATGAGAAAACACTCGGTTCCTCTATTCCTAACCCTGAGAAATCACTTGAAGTATGA 939 0.4026 MSEDLKKTGSVGHEKMSQEQQAKIIEVRKLIGILSEKETVYCTDATISRYLKSQNWNVKKASQMLKQSLKWRREYKPEEIRWDEVSNEAEIGKMYRANYCDKHGRPVIIMRTDRENSKSLKEEIKHFVYCMENAVLNLPPLQEQVVWLVDFHGFNLSNVSFKITREISHILQKYYPQRLGLAIMYDAPGIFQPFFAMVKVLLESESYKKVKFVYSNDQNTKKIMEGLFDMDQLEPAFGGNNDTEFDMNKYAKRMKEEDNKMHSLWTRTNSLSLVSRNIPSSDSTGSEADSDASNNEKTLGSSIPNPEKSLEV* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3183 312 MobiDBLite consensus disorder prediction 276 312 - -
Psa5g3183 312 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 82 245 IPR001251 -
Psa5g3183 312 Pfam CRAL/TRIO domain 97 239 IPR001251 -
Psa5g3183 312 SUPERFAMILY CRAL/TRIO domain 82 260 IPR036865 -
Psa5g3183 312 MobiDBLite consensus disorder prediction 276 305 - -
Psa5g3183 312 PANTHER GH16843P 1 303 - -
Psa5g3183 312 Pfam CRAL/TRIO, N-terminal domain 21 66 IPR011074 -
Psa5g3183 312 PANTHER CRAL-TRIO LIPID BINDING DOMAIN, CRAL/TRIO DOMAIN-CONTAINING PROTEIN-RELATED 1 303 - -
Psa5g3183 312 SUPERFAMILY CRAL/TRIO N-terminal domain 15 84 IPR036273 -
Psa5g3183 312 CDD SEC14 90 240 IPR001251 -
Psa5g3183 312 Gene3D - 2 276 IPR036865 -
Psa5g3183 312 SMART sec14_4 88 242 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3183 Psa-Chr5 248062211 248064884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3183 47 210 Acyl Lipid Metabolism Gene Families AT5G47730 26.984 4.52e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3183 - - cam:105852179 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3183 5 248062211 248064884 Psa5g3183 5 248062211 248064884 ECH