Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3176 ATGGGTTCGATTTTTAGTGTTGCGAGGGCGAGTAATACCAATTCTGATAAAAGTGAGTGGGATGGAGTCTCTCCGAATGAGATATGTAAGAGACAAAGAATGTCGCTTACGGTTGACGAGGAGAATCCAAGACTATTCCCTAATCTTCCCGATGAGGTATCGATTCAGATTATTGCTAGAGTTCCGAGAATTTGTTACTTCAATGTAAGGTTGGTGTCAAGGAAGTGGAAATCGACTATCATGAGTTCGGAGCTATATAAAATAAGAAAAGAACTAGGGACAACAGAAGAGTGGCTATATATGTTGGTTAAGGTTGGAGAAAACAAGCTTTTTTGGCATGCTGTTGATCCTCGGTCTCGGATATGGCAGAGACTGCCTACTATGCCTCATGTTGTTGATGAAGAGGAATCTAGAAAAGGTTCTTCTTCTGGGCTTTGGATGTGGAACATGGTGGAAGGTATGAGAATTGCTGAAGTTATTAGAGGCTTTTTTGGACAGAAGGATGCATTTGATGAAATGCCGTTTTGTGGTTGTGCTATTGGAGCTGTTGGTGGATGTCTCTATGTTTTAGGCGGATTCTCGAAAGCTTCGACTATGAGATGCGTCTGGCGATTCGACCCAACACAAAATACGTGGAGCGAGGTGACTTCTATGTCTACAGGTCGGGCGTATTGTAAGACAGGAATCTTAAACAACAAGCTTTATGTTGTTGGAGGGGTTAGTCAAGGTTCCGCCGGATTGCTACCTCTTCAATCTGCTGAAGTTTTTGATCCTTCGACAGGTACATGGTCAGATGTGCCTAGTATGCCATTCTCAAGAGCTCAGGTCCTTCCCAACGCCTTCTTGGCTGACATGTTAAAGCCGATTGCCACAGGGTTGACGTCATACATGGGAAGGTTATGTGTTCCGCAGAGTTTGTATTCATGGCCATTTTTTGTCGATGTTGGTGGAGAAATCTATGATCCTGAAACAAACTCATGGATAGAAATGCCAATTGGAATGGGCGAGGGTTGGCCGGCACGGCAGGCAGGTACAAAATTAAGTGTCGTAGTGGACGGCGAATTATATGCTTTTGATCCTTCTAATACTATGGACAGTGGAAGGATCAAGGTATATGATCAAGGAGAAGATGCTTGGAAAGTTGTTATTGGAAAAGTCCCTATATATGGTTCTGATGATTCGGAATCTCCTTATCTACTTGCTGGTTTCCATGGAAAACTTCATGTCATCACAAAAGATGCCAATCATAATATTTCTGTTCTGCAAGCTGAGCTGCGCAACAATTTGAATTCTTCACCGTCGTCGTCGTCCTCAACTCTGTCACAAAGTTCATTGCATGAATCCGTGGACCCGCCTGTCGAAACAGATGCAGTAGTTTGGAAAATAATTGCAAGTAGGTGTCTGGGACAGGTTGAACTAGTTAGTTGTCAAGTTATTGACATGTAG 1446 0.4315 MGSIFSVARASNTNSDKSEWDGVSPNEICKRQRMSLTVDEENPRLFPNLPDEVSIQIIARVPRICYFNVRLVSRKWKSTIMSSELYKIRKELGTTEEWLYMLVKVGENKLFWHAVDPRSRIWQRLPTMPHVVDEEESRKGSSSGLWMWNMVEGMRIAEVIRGFFGQKDAFDEMPFCGCAIGAVGGCLYVLGGFSKASTMRCVWRFDPTQNTWSEVTSMSTGRAYCKTGILNNKLYVVGGVSQGSAGLLPLQSAEVFDPSTGTWSDVPSMPFSRAQVLPNAFLADMLKPIATGLTSYMGRLCVPQSLYSWPFFVDVGGEIYDPETNSWIEMPIGMGEGWPARQAGTKLSVVVDGELYAFDPSNTMDSGRIKVYDQGEDAWKVVIGKVPIYGSDDSESPYLLAGFHGKLHVITKDANHNISVLQAELRNNLNSSPSSSSSTLSQSSLHESVDPPVETDAVVWKIIASRCLGQVELVSCQVIDM* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3176 481 SMART fbox_2 49 89 IPR001810 GO:0005515
Psa5g3176 481 SUPERFAMILY Kelch motif 106 410 IPR015915 GO:0005515
Psa5g3176 481 Pfam Kelch motif 222 270 IPR006652 GO:0005515
Psa5g3176 481 Pfam Kelch motif 174 219 IPR006652 GO:0005515
Psa5g3176 481 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 11 480 - -
Psa5g3176 481 Pfam F-box domain 46 86 IPR001810 GO:0005515
Psa5g3176 481 Gene3D - 106 387 IPR015915 GO:0005515
Psa5g3176 481 ProSiteProfiles F-box domain profile. 43 89 IPR001810 GO:0005515
Psa5g3176 481 SUPERFAMILY F-box domain 43 99 IPR036047 GO:0005515
Psa5g3176 481 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 11 480 - -
Psa5g3176 481 SMART kelc_smart 186 232 IPR006652 GO:0005515
Psa5g3176 481 SMART kelc_smart 233 279 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3176 Psa-Chr5 247456268 247458496 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3176 39 268 Miscellaneous Gene Families AT4G33900 28.632 6.11e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3176 - - gmx:100806691 813.527