Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3174 ATGGGAGTACAAGGTACTTTGGAATACTTGTCTGATTTACTCAGTAGCACCACAAAGAAGAAGAAAAAGAAGCAAACCCAAACTGTAGCTCTTAAAATCAGAATGGATTGTGATGGCTGTGTTCGTAAAGTTAAGCATGTCCTTTCTGGTGTTAAAGGAGTTAAGAAAGTGGATGTGGATATGAAGCAGCAGAAAGTAACAGTGAGTGGATATGTTGAGCCAAAGAAAGTGTTGAAAGCTGCACAATCAACAAAGAAGAAGGTTGAACTTTGGCCTTATGTTCCATACACTATGGTGGCTCATCCATATGTTTCTCAAGCTTATGATAAAAAGGCTCCTCCTAATATGGTTAGAAAAGTTGATAATGCTGCTCTTGCTTATACACTTGGAAAGGATGGACGACGAGTGCATGTGATTGAAAGAGATTTGAGTGAACCGGATAGGATTGTAGGTGAATCGGTACAACCTGGTGGATACCTAAAGTTACTTGAGTGGGGTCTTGAAGACTGTGTGGATGAAATTGATGCGCAAAGAGTCTTTGGCTATGCTCTTTATAAGGATGAAAAAACACCCAGTTTGTCTTATCCCTTAGAAAATTTTGACTCTAATGTATATGGACGAAGCTTTCAAGGAAATATTGATCGTGCTAGAAATGATGGACGACGAGTGCATGTGATTGAAAGAGATTTGAGTGAACCGGATAGGATTGTAGGTGAATCGGTACAACCTGGTGGATACCTAAAGTTACTTGAGTGGGGTCTTGAAGACTGTGTGGATGAAATTGATGCACAAAGAGTCTTTGGCTATGCTCTTTATAAGGATGAAAAAACACCCAGTTTGTCTTATCCCTTAGAAAATTTTGACTCTAATGTATATGGACGAAGCTTTCAAGGAAATATTGATCGTGCTAGAAATGTTATTGAGTTTATGAAAAATGATGGATGTTGTCCCAACTCAGCCCTAGTTGATGGATTATGTAAAGCAGGAAAACCGGAAGATGCAAAAGGGGTTTTGGCTGAAATGAAGAACTTTGTTTTGAAACCTGATACGGTTACCTACACTTCTTTGATCAATTTTTTCTGTAGGAATGGGCAAATTGATGAGGCTACAAAGTTGCTTAAAGAAATGAAGGAAAATGAATGTGAGGCTGATACTGTTACATTCAATGTGATACTCGGAGGCTTGAGCAGGGAAGGTAGATTTGACGAGGCTTTGGATATGATTGAGAAACTCCCACGCCAAGGTGTATATTTGAACAAGGGTAGTTACAGGATTGTACTAAACTCGTTAACTCAAAAATCAACTGCGCCGTGGAGGTGTCATGGAGGCAATCAGGATAAGTTGTGTTGGCTTTCCCACAAAAAAACATTTGATGAGTTCGTGGATAGATTCGGGCTTCTTGCACCTGAAGTTTTGGATCATAGTTCTGATAAGAAGTCAAAGGAGAATGGAAAGGGTGTACAGTCTGTAGCTAATCTTACATCTTACCCACTAAAAAGTTCGCAAGAGCAGAACTTCACGATTCCAGTTCAGCCAGTGAACTTTTCTTACAAGCCGGGTGCAACATCTGATACGGTGGCGGAAACAGTAAGCAGCCACAAACTTAACAATGGAAGAAATGGCTTGGGATTTGTTCGGCAGCCTGTGATGGATTGGGGTGTCGGAGTTACAATAGAAAGGAAGGTCGACTTGATTCACTTTTGA 1704 0.4026 MGVQGTLEYLSDLLSSTTKKKKKKQTQTVALKIRMDCDGCVRKVKHVLSGVKGVKKVDVDMKQQKVTVSGYVEPKKVLKAAQSTKKKVELWPYVPYTMVAHPYVSQAYDKKAPPNMVRKVDNAALAYTLGKDGRRVHVIERDLSEPDRIVGESVQPGGYLKLLEWGLEDCVDEIDAQRVFGYALYKDEKTPSLSYPLENFDSNVYGRSFQGNIDRARNDGRRVHVIERDLSEPDRIVGESVQPGGYLKLLEWGLEDCVDEIDAQRVFGYALYKDEKTPSLSYPLENFDSNVYGRSFQGNIDRARNVIEFMKNDGCCPNSALVDGLCKAGKPEDAKGVLAEMKNFVLKPDTVTYTSLINFFCRNGQIDEATKLLKEMKENECEADTVTFNVILGGLSREGRFDEALDMIEKLPRQGVYLNKGSYRIVLNSLTQKSTAPWRCHGGNQDKLCWLSHKKTFDEFVDRFGLLAPEVLDHSSDKKSKENGKGVQSVANLTSYPLKSSQEQNFTIPVQPVNFSYKPGATSDTVAETVSSHKLNNGRNGLGFVRQPVMDWGVGVTIERKVDLIHF* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3174 567 TIGRFAM PPR: pentatricopeptide repeat domain 320 350 IPR002885 -
Psa5g3174 567 TIGRFAM PPR: pentatricopeptide repeat domain 386 419 IPR002885 -
Psa5g3174 567 TIGRFAM PPR: pentatricopeptide repeat domain 351 384 IPR002885 -
Psa5g3174 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 384 418 IPR002885 -
Psa5g3174 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 349 383 IPR002885 -
Psa5g3174 567 Gene3D - 123 219 IPR036188 -
Psa5g3174 567 ProSiteProfiles Heavy-metal-associated domain profile. 35 90 IPR006121 GO:0046872
Psa5g3174 567 Pfam PPR repeat family 348 395 IPR002885 -
Psa5g3174 567 Gene3D - 13 92 - -
Psa5g3174 567 CDD HMA 35 89 IPR006121 GO:0046872
Psa5g3174 567 PANTHER SQUALENE MONOOXYGENASE 120 210 IPR040125 GO:0004506|GO:0016126
Psa5g3174 567 PANTHER SQUALENE MONOOXYGENASE 218 297 IPR040125 GO:0004506|GO:0016126
Psa5g3174 567 SUPERFAMILY HMA, heavy metal-associated domain 26 92 IPR036163 GO:0046872
Psa5g3174 567 Pfam Heavy-metal-associated domain 33 86 IPR006121 GO:0046872
Psa5g3174 567 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 314 348 IPR002885 -
Psa5g3174 567 Pfam PPR repeat 319 343 IPR002885 -
Psa5g3174 567 Gene3D Tetratricopeptide repeat domain 262 459 IPR011990 GO:0005515
Psa5g3174 567 PANTHER SQUALENE EPOXIDASE 2, MITOCHONDRIAL 218 297 - -
Psa5g3174 567 PANTHER SQUALENE EPOXIDASE 2, MITOCHONDRIAL 120 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3174 Psa-Chr5 247184522 247188244 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3174 219 304 Miscellaneous Gene Families AT1G58440 70.455 1.03e-31 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3174 - - mtr:MTR_3g100600 235.343