Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g3116 ATGATCACTGTTTACGCCAAGTGTTACAGTTTCAATGATGCACGTAACCTGTTCGACGAAATGCCTCATAGAAACATAATTTCTTGGACAACAATGGTCTCTGCATTCACCAATTCTGGCAGGCCCCGCGAAGCTCTAATGCTCTATAACGAGATGTTAGATTCTAAAACAGAACAGCCCAATCAGTTCATGTACTCCGCGGTTCTCAAAGCGTGTGGCCTAGTGGGGAATGTTGAATTGGGTAAGTTGGTTCATCAGCATATATTTCAATCTAAGTTGGATATTGATACTGTCCTGATGAATACCCTCTTGGACATGTATGTCAAATGTGGGAGTTTGAGGGAAGCTCAACAAGTTTTCTATGAAATCCCGTGTAAAAATGCTACGTCGTGGAATACTCTCATTCTGGGACATGCTAAACTAGGTTTAATTGGCGATGCGATGAAACTGTTCGATAAAATGCCGGAACCGGATATTGTATCTTGGAATAGTATTATTGCTGGCCTTGTAGATAATGATAGTCCCCATGTGTTGCAATTTGTTTCTATGATGCACGTGAAAGGCCTTAAACTGGATGAATTCACATTACCAAATGCTCTCAAAGCTTGTGGTCTTGGTGGTGAGTTAATGCTAGGGAGGCAGATTCATTGTTATATTATTAAGTTGGGGCTTGAGTCTAGCTGCTATTGTATATCGACATTGATTGATATGTATTCAAACTGCAAGTTTCTGGGTGAAGCTGTGAAGATTTTTGATCAATTCTTTGGGAGCTCTCCGGTTTCTGAAAGCTTGCCGCTTTGGAATTCTATGCTTTCTGGGTATGTTGCCAATGGAGATTATGACGAGGCTCTCAGTATGATTTCTCATATGCATCATTCTGGTGTACTCTTTGATTTTCATACCTTTAGTATTGCTTTAAAGATATGCATTTACTTCTATAACTCAAGTTTGGCATCTGAAGTACACGGATTGGTCATCACTAGTGGCTATGAGTTAGATTTTGTTATTGGAAGCATTCTTATTGATCTGTATTCAAAACGGGGCAATATTGACAATGCATTAAGACTGTTTGAGAGGTTGCCGGATAAAGATGTTGTGGCTTGGTCTAGTTTGATTGCCGGTTGCGCTAGCTTCGGTTCAGATAAGTTAGCTTTTTCCCTTTTCATGGATATGATTCATTTGGGTCTTCAGGTTGACCATTTTGTCATCTCAATTGTTCTGAAAGCCTGTTCAAGTATGGCATCTCACCAACGTGGCAAGCAAGTTCACACTTTATGTATTAAGAAGGGGTATGAATCAGAGAGAGTAATTACAACTGCTTTAATTGATATGTATGCAAAATGTGGTGACATCGAGGATGGCTTAGCTTTGTTTGGTTGTCTGTCAGAAATCGATACCATGAGTTGGACAGGTATAATTGTGGGATGTGCACAAAATGGAAGAGCTAACGAGGCAATTGGTCTTCTGCTTAAGATGATAGAATCTGGTACAAAGCCAAACAAAATCACCATTCTAGGTGTTCTTACTGCTTGTAGGCATGCTGGCCTAGTTGAAGAGGCATGGGCTGTGTTTAATTCTATTGAAACAAAACATGGATTGATACCATGCCAAGAACATTACAATTGTATGGTCGATATACTTGGTCAAGCTGGACGTTTTGAAGAAGCAGGAAAATTGATTAGTGAAATGCCATTTAAGCCCGACAAAACTTTATGGTCTTCCTTGCTTGGTGCCTGTGGAACTTACAAGAACCGACATCTTGCAAACATTGTTGCTGAGCATCTCCTTGCTACCTCGCCAGAAGATGTTTCTGTATACATAATGCTGTCAAATGTTTATGCATCTCTTGGAATGTGGGATAGTTTAAGCAAAGTCAGAGAAGCTGTCAAAAAATTAGGTAAAAAAGGAGCTGGAAAAAGCTGGATTGAGATCTCAAGTTGA 1941 0.3993 MITVYAKCYSFNDARNLFDEMPHRNIISWTTMVSAFTNSGRPREALMLYNEMLDSKTEQPNQFMYSAVLKACGLVGNVELGKLVHQHIFQSKLDIDTVLMNTLLDMYVKCGSLREAQQVFYEIPCKNATSWNTLILGHAKLGLIGDAMKLFDKMPEPDIVSWNSIIAGLVDNDSPHVLQFVSMMHVKGLKLDEFTLPNALKACGLGGELMLGRQIHCYIIKLGLESSCYCISTLIDMYSNCKFLGEAVKIFDQFFGSSPVSESLPLWNSMLSGYVANGDYDEALSMISHMHHSGVLFDFHTFSIALKICIYFYNSSLASEVHGLVITSGYELDFVIGSILIDLYSKRGNIDNALRLFERLPDKDVVAWSSLIAGCASFGSDKLAFSLFMDMIHLGLQVDHFVISIVLKACSSMASHQRGKQVHTLCIKKGYESERVITTALIDMYAKCGDIEDGLALFGCLSEIDTMSWTGIIVGCAQNGRANEAIGLLLKMIESGTKPNKITILGVLTACRHAGLVEEAWAVFNSIETKHGLIPCQEHYNCMVDILGQAGRFEEAGKLISEMPFKPDKTLWSSLLGACGTYKNRHLANIVAEHLLATSPEDVSVYIMLSNVYASLGMWDSLSKVREAVKKLGKKGAGKSWIEISS* 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g3116 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 364 398 IPR002885 -
Psa5g3116 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 25 59 IPR002885 -
Psa5g3116 646 TIGRFAM PPR: pentatricopeptide repeat domain 267 296 IPR002885 -
Psa5g3116 646 TIGRFAM PPR: pentatricopeptide repeat domain 468 500 IPR002885 -
Psa5g3116 646 TIGRFAM PPR: pentatricopeptide repeat domain 130 155 IPR002885 -
Psa5g3116 646 TIGRFAM PPR: pentatricopeptide repeat domain 540 563 IPR002885 -
Psa5g3116 646 TIGRFAM PPR: pentatricopeptide repeat domain 27 58 IPR002885 -
Psa5g3116 646 Pfam PPR repeat family 25 72 IPR002885 -
Psa5g3116 646 Pfam PPR repeat family 267 308 IPR002885 -
Psa5g3116 646 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Psa5g3116 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Psa5g3116 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Psa5g3116 646 Pfam PPR repeat 439 461 IPR002885 -
Psa5g3116 646 Pfam PPR repeat 99 124 IPR002885 -
Psa5g3116 646 Pfam PPR repeat 130 156 IPR002885 -
Psa5g3116 646 Pfam PPR repeat 366 395 IPR002885 -
Psa5g3116 646 Pfam PPR repeat 539 563 IPR002885 -
Psa5g3116 646 Pfam PPR repeat 338 364 IPR002885 -
Psa5g3116 646 Pfam PPR repeat 232 253 IPR002885 -
Psa5g3116 646 Pfam PPR repeat 468 496 IPR002885 -
Psa5g3116 646 Gene3D Tetratricopeptide repeat domain 314 426 IPR011990 GO:0005515
Psa5g3116 646 Pfam E motif 582 643 IPR046848 -
Psa5g3116 646 Gene3D Tetratricopeptide repeat domain 175 313 IPR011990 GO:0005515
Psa5g3116 646 Gene3D Tetratricopeptide repeat domain 442 646 IPR011990 GO:0005515
Psa5g3116 646 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 42 641 - -
Psa5g3116 646 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 40 - -
Psa5g3116 646 Gene3D Tetratricopeptide repeat domain 126 174 IPR011990 GO:0005515
Psa5g3116 646 PANTHER BNAC03G28070D PROTEIN 3 40 - -
Psa5g3116 646 PANTHER BNAC03G28070D PROTEIN 42 641 - -
Psa5g3116 646 SUPERFAMILY TPR-like 24 621 IPR011990 GO:0005515
Psa5g3116 646 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 465 499 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g3116 Psa-Chr5 241309312 241312299 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g3116 1 644 Glycoside Hydrolase AT3G49170 31.061 1.86e-103 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g3116 - - mtr:MTR_3g072900 1087.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g3116 5 241309312 241312299 Psa5g3116 5 241309312 241312299 ECH