Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2889 ATGAACATGCCCTTCTCTCCCCATGTTCTCCTTCCTCTTACACTTATCACTTTCATCATGTTCCTTCAAATCCAAACAATCACTTCTTCTTCTCTCTCATCTTCCCCACAAAAACAACCTTTCATATTACCATTAAAACTTCAAACATTCCCACATGCCACGGTTTCACTTCCAAACCCTTCTTCACGTAAACTCTCTTTCCAACACAATGTAACCTTAACAGTTTCACTAACATTAGGCTCGCCCCCACAGAATGTTACCATGGTCCTCGACACAGGGAGTGAACTCTCATGGCTACACTGTAAAAAGCTCCCAAATTTAAACTCCATTTTCAACCCCCTCATTTCTTCCACATACACCCCTATCCCCTGCACTTCACCCGTTTGTAAAACCCGAACCCGAGATTTTCCCGTACCCGTTTCATGCGACACGAAAAAACTCTGCCACGCTACAATCTCCTACGCCGACGCCTCCTACATAGAAGGCAACCTCGCCACGGAGACTTTCTTCGCCGGCGGGTCAGCACAACCCGGAACCATATTCGGGTGTATGGATTCCGGGTTCAGCTCCAACACATACGAAGACTCCAAAACAACCGGGTTAATGGGTATGAACCGTGGGTCTCTCTCGTTTGTAACCCAAATGGGGTTACCCAAATTCTCATATTGTATCTCCGGCAAAGACTCCACCGGCGTGTTACTTTTCGGCGACGCAAATTTTAACTGGCTCGGCCCATTAAAATACACACCTCTCGTCAAAATGTCAATCCCATTACCGTATTTCGATCGAGTCGCATACACGGTTCGACTCGAGGGAATACGCGTCGGGAAGAAGCTACTTCAGGTACCAAAAACAATCTTTGCCCCGGATCACACCGGAGCGGGTCAGACAATGGTGGATTCGGGTACACAGTTTACCTTCCTTTTAGGACCGGTTTACACCGCATTACGAGAAGAGTTTCTTACTCAGACAAAAGGGTCATTAACCCTTTTGAACGACACAAATTTCGTGTTCCAGGGAGCTATGGATTTATGTTATCGTGTTGCTTCGGGTCGGGTGGGTCTTCCGTCGTTACCGGCGGTGACCCTTATGTTTGAAGGAGCGGAGATGAGTGTTTCAGGGGAGAGGCTATTGTATAAAGTAAGTGATGACGTGGCAAAATGGAAGAATGATTTGGTGTATTGTTTCACGTTTGGGAACTCTGACTTGTTGGGAATTGAGGCTTACGTGATTGGACATTATCATCAAATGAATGTGTGGATGGAGTTTGATTTGGTCAATTCTAGAGTTGGATTTGCTGATACTAGTTGTGAGCTTGCAAGTCAACGATTAGGCATGGTTCCTTAG 1347 0.461 MNMPFSPHVLLPLTLITFIMFLQIQTITSSSLSSSPQKQPFILPLKLQTFPHATVSLPNPSSRKLSFQHNVTLTVSLTLGSPPQNVTMVLDTGSELSWLHCKKLPNLNSIFNPLISSTYTPIPCTSPVCKTRTRDFPVPVSCDTKKLCHATISYADASYIEGNLATETFFAGGSAQPGTIFGCMDSGFSSNTYEDSKTTGLMGMNRGSLSFVTQMGLPKFSYCISGKDSTGVLLFGDANFNWLGPLKYTPLVKMSIPLPYFDRVAYTVRLEGIRVGKKLLQVPKTIFAPDHTGAGQTMVDSGTQFTFLLGPVYTALREEFLTQTKGSLTLLNDTNFVFQGAMDLCYRVASGRVGLPSLPAVTLMFEGAEMSVSGERLLYKVSDDVAKWKNDLVYCFTFGNSDLLGIEAYVIGHYHQMNVWMEFDLVNSRVGFADTSCELASQRLGMVP* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2889 448 Gene3D Acid Proteases 65 236 IPR021109 -
Psa5g2889 448 Pfam Xylanase inhibitor C-terminal 265 433 IPR032799 -
Psa5g2889 448 Gene3D Acid Proteases 243 442 IPR021109 -
Psa5g2889 448 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 88 99 IPR001969 GO:0004190|GO:0006508
Psa5g2889 448 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 20 446 - -
Psa5g2889 448 ProSiteProfiles Peptidase family A1 domain profile. 73 433 IPR033121 -
Psa5g2889 448 SUPERFAMILY Acid proteases 74 437 IPR021109 -
Psa5g2889 448 Pfam Xylanase inhibitor N-terminal 75 237 IPR032861 -
Psa5g2889 448 CDD pepsin_A_like_plant 72 437 IPR034161 -
Psa5g2889 448 PANTHER ASPARTYL PROTEASE-RELATED 20 446 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2889 Psa-Chr5 219838157 219840480 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2889 74 252 Miscellaneous Gene Families AT1G44130 30.052 3.83e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2889 - - gmx:100783835 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2889 5 219838157 219840480 Psa5g2889 5 219838157 219840480 ECH