Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2884 ATGGATTCAAATCTTGAACCGGTGCCAATTACTTCACAAAAACATGACCCAGCTTGGAAGCATTGTCAGTTGTTTAAGAATGGGGAGAAAGTGCAACTCAAGTGTATATATTGTCTTAAGATGTTCAAAGGTGGTGGGATTCATAGGTTTAAGGAACACCTTGCTTGTCAGAAAGGGAATGCTTCAATGTGCAGCAGTGTCCCTGCTGATGTTAGGATTCATATGCAACAGAGTTTGGATGGGGTTGTGGTGAAAAAGAGGAAGAGACAGAAAATTGAGGAAGAGATTATGAATGTTAATCCTTTAGCTACTGTTTTGAATGGTGCTTCTAATCAAATGGATGTGAATCATATGGTGCAGCAGCCTATTGGAGTTCTTGATTCAGTGGAACAAAATTCATGTCACATGTTACAGTCTCCGGGTGATGGAATGAGTAAAAGTGTAGAGAGAAGGAAGAAGATTAGAGCTACTAAGAATCCTGCAGTAGTGGTTTATTCAAACTCTGAGGCTGAGACTGTTGTTGCCGCTGTGGAGAAGAATGCGTTGTTTCCGAAAAAGGTGGACAATCATATTCATATGGCTATAGGAAGGTTTTTGTATGATATCGGTGCGCCTCTTGATGCTGTGAACTCGATATATTTTGAGCAAATGGTTGAAGCAATTGCTTCCGGGGGGTCGGGTTTTCAACGTCCCTCACATCATGAGCTTCGTGGCTGGGTCCTGAAAAACTCTGTGGAAGATGTGAAGAATGATATTGATAGATGCAAGATGACATGGGGGAGGACTGGCTGTTCCATTTTGGTTGATCAATGGACTACAGAAGCTGGTAGAATACTTATAAGTTTTTTGGCTTATTGTTCTGAAGGTATAGTCTTTCTGAAATCCTTGGATGCGACTGAGATATCGACATCGGCGGAGTTTTTATACGAGTTGATAAAACAAGTAGTGGAAGAAGTTGGGGTCGCGCAAGTTGTGCAAGTGATTACATCGGGAGAAGAACAGTATGCTGTTGCCGGAAAAAGGCTAACCGATGCTTTTCCTAACATTTATTGGAGTCCTTCTGCAGCTCATTGCATCGATTTGATACTTGAAGATTTCGGAAATCTTGAGTGGATTAGTGCGGTAATTGAACAAGCTAAATCTGTCACGAGATTTGTCTACAATTACAGCGCAATTTTGAATATGGTTAGAAGGTATACTTTGGGGAATGATATTGTGGATCCCTCGTCCTCGCGTTTCACGACAAACTTCACCACATTGAAACGAATGGTTGATCTTAGACACAATTTACAGGCCATGGTTACTTCTCAGGAATGGATGGATTGCCCATATTCAAAGAAAACAGCAGGCTTGGAAATCATTCAAGGGGATATACACAGCGAGATTCTCTCCGGGATGTTCGACTGCATAGAGAGATTGGTACCTGATACACGAGTCCAAGATAAAATTATCAAAGAGTTAAACTTGTATAAGTCGGCCGCAGGAGACTTTGGGAGAAAGATGGCAATCAGAGCTAGAGATAATCTGCTTCCTTCTGAATGGTGGTCAACATATGGAGGAGGCTGTCCTAACTTGTCACGCTTAGCAATTCGCATTCTTAGCCAAACATCAAGTGTGATATTCTGCAAGAGAAACCAAATTCCTTTTGAACAAATAATCAATACAAGGAATTATATAGAGCGCCAACATCTTACTGATCTCGTCTTTGTTCAATACAACTTACGATTGAGACAAATGTTTATGAATAAAGAACAAGAATCTAGTGACCCCTTGTCATTCGATAACATGTCTAATGTCGAAGACTGGATCAGGCCACGGGAGTTATACTTAGAAGAGTACGGGAACTCCGATTGGATGACACTCGATTCGTCCTCCATTAACACAATGCTTTTAAGGCCTTTAAATGATGAACCTGAAGAAATTTGTGAAGGGTTTGATGATCATGAGATTTTCATTAGTCAGAAAGACGATGAGAATGTGAATCCTGGAGACTCGTTCGAAAACCATTAG 2010 0.4095 MDSNLEPVPITSQKHDPAWKHCQLFKNGEKVQLKCIYCLKMFKGGGIHRFKEHLACQKGNASMCSSVPADVRIHMQQSLDGVVVKKRKRQKIEEEIMNVNPLATVLNGASNQMDVNHMVQQPIGVLDSVEQNSCHMLQSPGDGMSKSVERRKKIRATKNPAVVVYSNSEAETVVAAVEKNALFPKKVDNHIHMAIGRFLYDIGAPLDAVNSIYFEQMVEAIASGGSGFQRPSHHELRGWVLKNSVEDVKNDIDRCKMTWGRTGCSILVDQWTTEAGRILISFLAYCSEGIVFLKSLDATEISTSAEFLYELIKQVVEEVGVAQVVQVITSGEEQYAVAGKRLTDAFPNIYWSPSAAHCIDLILEDFGNLEWISAVIEQAKSVTRFVYNYSAILNMVRRYTLGNDIVDPSSSRFTTNFTTLKRMVDLRHNLQAMVTSQEWMDCPYSKKTAGLEIIQGDIHSEILSGMFDCIERLVPDTRVQDKIIKELNLYKSAAGDFGRKMAIRARDNLLPSEWWSTYGGGCPNLSRLAIRILSQTSSVIFCKRNQIPFEQIINTRNYIERQHLTDLVFVQYNLRLRQMFMNKEQESSDPLSFDNMSNVEDWIRPRELYLEEYGNSDWMTLDSSSINTMLLRPLNDEPEEICEGFDDHEIFISQKDDENVNPGDSFENH* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2884 669 Pfam hAT family C-terminal dimerisation region 486 574 IPR008906 GO:0046983
Psa5g2884 669 ProSiteProfiles Zinc finger BED-type profile. 13 71 IPR003656 GO:0003677
Psa5g2884 669 PANTHER OSJNBA0013A04.12 PROTEIN 7 452 - -
Psa5g2884 669 PANTHER OSJNBA0013A04.12 PROTEIN 454 642 - -
Psa5g2884 669 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 452 - -
Psa5g2884 669 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 454 642 - -
Psa5g2884 669 Pfam Protein of unknown function (DUF 659) 231 382 IPR007021 -
Psa5g2884 669 SUPERFAMILY Ribonuclease H-like 264 576 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2884 Psa-Chr5 219365583 219368616 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2884 - - aprc:113850304 733.021