Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2877 ATGGAGTCACCACAAACAAGAAAATCAGGGCTTAATCTCCCAGCTGGAATGTCCAGCATAACCTCTTTACGCCTCGAAACCCTCTCAACTCCCCCATCTTCCGCTTCACCTCGTGCAATCTCAAATCTCTCATCCTCATCATCACCTTCTAAATCTTCTTCATGTAGTGATAGATTCATACCTTGTAGATCCTCTTCAAGGCTCCACACATTTGGCTTAATCGATAAACCATCACCGGTTAAAGAAGGGAGTAATGAAGCTTACTCGAGATTATTGAAATCTGAGCTGTTTGGATCTGATTTTGCTTCTCCTTCTTCTCCTGCAGGTTGTGGTGCTGGTGCTGCTGCTGGTGGTGCTGTTTCGCCTATGATCAGTCCTAGCAAGAATATGCTTCGGTTTAAGACGGATCATTCTGGACCTTCTTCGCCGTTTTCGTCCTCTTCACCTTCAATTTTTGGACATCATTCTGGATTCTCTAATGAATCTGCTACTCCTCCTAAGCCTCCTAGGAAAGTTCCCAAGACACCCCACAAGGTTTTGGATGCACCTTCACTTCAAGATGACTTTTACTTGAATCTTGTGGACTGGTCTTCACAAAATACTCTAGCAGTGGGGCTTGGCACCTGTGTTTATCTATGGAGTGCTTCAAACAGCAAAGTGACTAAGCTTTGTGACTTGGGGCCTTATGATGGTGTTTGTTCTGTTCAATGGACCAAGGAGGGTTCTTTCATATCTATTGGTACAAACCTCGGTCAAGTTCAGATTTGGGACGGTACTAAATGCAAAAAGGTCAGAACAATGGCAGGGCATCAAACAAGAACCGGTGTCTTGGCTTGGAATTCTCGAATTTTGGCTTCGGGGAGTAGGGATAGGAACATACTTCAGCATGACATGAGGGTTTCAAGTGACTTTATTGGCAAGCTTGTTGGCCACAAGTCTGAGGTTTGTGGATTAAAATGGTCATGTGATGATCGGGAGCTTGCGTCTGGTGGTAATGATAATCAGCTGTTGGTATGGAATCAGCACTCTCAGACACCAACTTTGAGACTTACAGAGCACACTGCGGCCGTGAAGGCCATTGCTTGGTCGCCTCACCAGAGCAACCTCCTTGTGTCTGGAGGTGGAACTGCTGATAGGTGTATTCGTTTCTGGAACACTACAAACGGTCACCAATTGAACTCTGTTGACACCGGAAGCCAGGTGTGTAACCTTGCTTGGAGTAAAAATGTAAATGAGCTAGTAAGTACTCATGGTTACTCACAAAATCAAATCATGGTGTGGAAATATCCATCACTAGCAAAGGTTGCAACTCTAACCGGCCATAGCATGAGAGTACTATACCTTGCAACGTCTCCTGATGGTCAGACAATAGTGACTGGTGCTGGGGATGAAACTCTGCGGTTTTGGAATATTTTCCCATCAATGAAAACACCTGCTGTAGTTAAAGATACAGGCCTTTGGTCACTAGGCCGTACCCAAATTCGATGA 1488 0.4503 MESPQTRKSGLNLPAGMSSITSLRLETLSTPPSSASPRAISNLSSSSSPSKSSSCSDRFIPCRSSSRLHTFGLIDKPSPVKEGSNEAYSRLLKSELFGSDFASPSSPAGCGAGAAAGGAVSPMISPSKNMLRFKTDHSGPSSPFSSSSPSIFGHHSGFSNESATPPKPPRKVPKTPHKVLDAPSLQDDFYLNLVDWSSQNTLAVGLGTCVYLWSASNSKVTKLCDLGPYDGVCSVQWTKEGSFISIGTNLGQVQIWDGTKCKKVRTMAGHQTRTGVLAWNSRILASGSRDRNILQHDMRVSSDFIGKLVGHKSEVCGLKWSCDDRELASGGNDNQLLVWNQHSQTPTLRLTEHTAAVKAIAWSPHQSNLLVSGGGTADRCIRFWNTTNGHQLNSVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLAKVATLTGHSMRVLYLATSPDGQTIVTGAGDETLRFWNIFPSMKTPAVVKDTGLWSLGRTQIR* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2877 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 438 471 - -
Psa5g2877 495 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 308 340 - -
Psa5g2877 495 PANTHER PROTEIN FIZZY-RELATED 3 9 495 - -
Psa5g2877 495 SMART WD40_4 431 470 IPR001680 GO:0005515
Psa5g2877 495 SMART WD40_4 217 257 IPR001680 GO:0005515
Psa5g2877 495 SMART WD40_4 260 297 IPR001680 GO:0005515
Psa5g2877 495 SMART WD40_4 173 214 IPR001680 GO:0005515
Psa5g2877 495 SMART WD40_4 301 340 IPR001680 GO:0005515
Psa5g2877 495 SMART WD40_4 388 428 IPR001680 GO:0005515
Psa5g2877 495 SMART WD40_4 343 385 IPR001680 GO:0005515
Psa5g2877 495 ProSitePatterns Trp-Asp (WD) repeats signature. 457 471 IPR019775 -
Psa5g2877 495 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 9 495 IPR033010 GO:0010997|GO:0097027|GO:1904668
Psa5g2877 495 MobiDBLite consensus disorder prediction 25 57 - -
Psa5g2877 495 Pfam Eukaryotic translation initiation factor eIF2A 337 465 IPR013979 -
Psa5g2877 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 438 471 IPR001680 GO:0005515
Psa5g2877 495 SUPERFAMILY WD40 repeat-like 171 471 IPR036322 GO:0005515
Psa5g2877 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 350 394 IPR001680 GO:0005515
Psa5g2877 495 Gene3D - 129 472 IPR015943 GO:0005515
Psa5g2877 495 ProSiteProfiles Trp-Asp (WD) repeats profile. 308 349 IPR001680 GO:0005515
Psa5g2877 495 ProSitePatterns Trp-Asp (WD) repeats signature. 372 386 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2877 Psa-Chr5 218992647 218996005 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2877 305 471 Miscellaneous Gene Families AT5G08390 20.833 1.71e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2877 K03364 - mnt:21408037 797.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2877 5 218992647 218996005 Psa5g2877 5 218992647 218996005 ECH