Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2858 ATGGACGATGAAGTGCGCAAGATCTTCAACAAATTCGATAAGAACGGCGACGGGAAGATCTCGCGCGCGGAGCTCAAGGAGATGATGCTGGCGCTCGGATCTAAGACGACGTCGGAGGAAGTTAATCGGATGATGGCGGAGGTTGACCAGAACGGCGATGGGTACATTGATCTGAAGGAGTTCGGAGAAATACACACCGGCCGTGGTGACGATAGAGAGCTCCAAGAGGCGTTTGAGATGTACGATTTGGACAAAAATGGACTGATCTCGGCGAAGGAGCTGCACGCGGTTATGCGGCGGTTGGGGGAGAAATGTTCTCTTAACGATTGCCGGAAAATGATCGGAAACGTCGACGCTGATCACGATGGTAATGTAAATTTCGAAGAGTTTAAGAAGATGATGAGTGGCTCCTAA 414 0.5048 MDDEVRKIFNKFDKNGDGKISRAELKEMMLALGSKTTSEEVNRMMAEVDQNGDGYIDLKEFGEIHTGRGDDRELQEAFEMYDLDKNGLISAKELHAVMRRLGEKCSLNDCRKMIGNVDADHDGNVNFEEFKKMMSGS* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2858 137 Pfam EF-hand domain pair 4 61 IPR002048 GO:0005509
Psa5g2858 137 Pfam EF-hand domain pair 72 135 IPR002048 GO:0005509
Psa5g2858 137 ProSiteProfiles EF-hand calcium-binding domain profile. 105 137 IPR002048 GO:0005509
Psa5g2858 137 SUPERFAMILY EF-hand 3 135 IPR011992 -
Psa5g2858 137 CDD EFh 4 66 IPR002048 GO:0005509
Psa5g2858 137 ProSiteProfiles EF-hand calcium-binding domain profile. 36 64 IPR002048 GO:0005509
Psa5g2858 137 SMART efh_1 109 137 IPR002048 GO:0005509
Psa5g2858 137 SMART efh_1 73 101 IPR002048 GO:0005509
Psa5g2858 137 SMART efh_1 40 68 IPR002048 GO:0005509
Psa5g2858 137 SMART efh_1 4 32 IPR002048 GO:0005509
Psa5g2858 137 ProSitePatterns EF-hand calcium-binding domain. 13 25 IPR018247 -
Psa5g2858 137 Gene3D - 1 70 - -
Psa5g2858 137 ProSitePatterns EF-hand calcium-binding domain. 82 94 IPR018247 -
Psa5g2858 137 ProSiteProfiles EF-hand calcium-binding domain profile. 1 35 IPR002048 GO:0005509
Psa5g2858 137 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 137 - -
Psa5g2858 137 Gene3D - 71 136 - -
Psa5g2858 137 ProSitePatterns EF-hand calcium-binding domain. 118 130 IPR018247 -
Psa5g2858 137 CDD EFh 73 135 IPR002048 GO:0005509
Psa5g2858 137 PANTHER EF HAND CALCIUM-BINDING FAMILY PROTEIN 1 137 - -
Psa5g2858 137 ProSiteProfiles EF-hand calcium-binding domain profile. 69 104 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2858 Psa-Chr5 217457390 217459136 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2858 3 135 EF-hand Containing Proteins AT1G18210 54.887 4.54e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2858 K13448 - gmx:100806813 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2858 5 217457390 217459136 Psa2g0972 2 71801791 71803234 PCT