Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2812 ATGTCTCTGCGCATGTCAATGTCAAAATTGCTCAAAAAACTCCGCTTTCCAGCTTCCCACACCTTCTCCGCCTCTACAGTTACCCAAAATCCACTGCCCATCTCATTTTCCGGAAAGGAACTTTCCCACTGGCATCAAACTGGTGCATATGGTTGGAGAACAAATCTTAGAGATCCTTGTTTATGGATTGTTATATCTGGACATGTAGTCGCGACACTTGGAATTGGTGCCAACATTACGTTTGCTGAGGACGTATCGTCTGAAACATCTTATGATAATAGTACTGGTGGATTGAAAAAAATTGAGGATGGTTCTGTAGCGTCAAATATACATACAGCAAAATGGAGAGTTTTTACGGATAAAGGAAGAGAGTTTTTCCTAGAGGGGAAATTTGATGATGCTGAAAGACTCTTCCTTGCTGCCATACAAGAAGCTAAAGAAGGTTTTGGCGAGCAGGATCCGCATGTTGCGTCTGCATGCAACAATCTGGCAGAGATGTACAGGGTCAAGAAGGCATTTGACAAAGCAGAACCATTGTATTTGGAAGCTATCAAGATCCTAGAAGAGTCGTTTGGTCCTGATGATGTAAGGGTTGCGGTTGCTGTTCACAACCTAGGGCAGTTCTACCTTGGACAGCGGATGCTGGATAAAGCACAAGTTAACTATGAGCGCGCTTTGAAGATAAAAAGGCGTGTTCTGGGATATGGTCATTCAGAATGTTCTGATACGATGTATCAAATCGGCATGGTGCTGTATCTTCAAGGAAAAGAAAAGGAGGCTGAGACCATTATTAAGGACTCCATAAGCATGCTAGAGAAAAGTGCCGAAGGGGAGTCATTAGTATGCATTAAAAGACTTCGTTTCCTCTCACAGTTATATTTGAAATCACACCGTCTTGATGAAGCTGAGATGGTCCAGAGAAAGATCCTGAACATAATGGAATTGTCAAAGGGGTGGAATTCTTTGGACACAGTTATTGCAGCTGAATCCTTGGCCTTGACACTACAAGCGTCTTCTGAAACAAAACAGTCCAAAGAGCTTCTTGAAAGATGTCTTGATGTCCGGAAAACCTTACTTCATAGCGATCATATTCAGATTGGTGCGAACCTACTTCATCTAGCAAGAGTGGCAATGCTTGATTACAGCCAACACAAAAAATTGGATGTTTCTAAAGCTAAAGCTGAGCTTGATATAGCAAAGGATCATTTGCATAATTCCATAAGGATCGCGCGTCAATGTTTAGATAAGGTATTGAAACATAAAGACAAGTCGAAGAAAAACAGTTTGGTTGGACGTTCTAGAAAGGAAGCCCAAGCAACACTTGTCATATTGTTGCAATCACTCAGCACTCTTTCGTCGGTGGAGTTGGCTAAGCAAGAATTGCAGGAGATTCAGGAAGGGGAAATTAACCTTAAGGCTAAAGAGGCACTTCTACAATGCATTGCTGCTTACAACGAGTTTGTTGTACATAACAAGTCCATTGGTGATTCACCTGAAATAAAGAATGAGTATCTTTCATGTTTTAAGCGTGCTCAAACCTTGCTTGGCAAGAAACTTGATGGAGATGGTATCCATAAGCTGAATCAAAAGAAATAA 1596 0.4148 MSLRMSMSKLLKKLRFPASHTFSASTVTQNPLPISFSGKELSHWHQTGAYGWRTNLRDPCLWIVISGHVVATLGIGANITFAEDVSSETSYDNSTGGLKKIEDGSVASNIHTAKWRVFTDKGREFFLEGKFDDAERLFLAAIQEAKEGFGEQDPHVASACNNLAEMYRVKKAFDKAEPLYLEAIKILEESFGPDDVRVAVAVHNLGQFYLGQRMLDKAQVNYERALKIKRRVLGYGHSECSDTMYQIGMVLYLQGKEKEAETIIKDSISMLEKSAEGESLVCIKRLRFLSQLYLKSHRLDEAEMVQRKILNIMELSKGWNSLDTVIAAESLALTLQASSETKQSKELLERCLDVRKTLLHSDHIQIGANLLHLARVAMLDYSQHKKLDVSKAKAELDIAKDHLHNSIRIARQCLDKVLKHKDKSKKNSLVGRSRKEAQATLVILLQSLSTLSSVELAKQELQEIQEGEINLKAKEALLQCIAAYNEFVVHNKSIGDSPEIKNEYLSCFKRAQTLLGKKLDGDGIHKLNQKK* 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2812 531 Gene3D Tetratricopeptide repeat domain 122 281 IPR011990 GO:0005515
Psa5g2812 531 SUPERFAMILY TPR-like 113 261 IPR011990 GO:0005515
Psa5g2812 531 ProSiteProfiles TPR repeat profile. 199 232 IPR019734 GO:0005515
Psa5g2812 531 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 517 - -
Psa5g2812 531 Coils Coil 454 474 - -
Psa5g2812 531 Gene3D Tetratricopeptide repeat domain 283 405 IPR011990 GO:0005515
Psa5g2812 531 SMART tpr_5 199 232 IPR019734 GO:0005515
Psa5g2812 531 SMART tpr_5 157 190 IPR019734 GO:0005515
Psa5g2812 531 SMART tpr_5 325 358 IPR019734 GO:0005515
Psa5g2812 531 SMART tpr_5 241 274 IPR019734 GO:0005515
Psa5g2812 531 SMART tpr_5 115 148 IPR019734 GO:0005515
Psa5g2812 531 Pfam Tetratricopeptide repeat 159 228 - -
Psa5g2812 531 SUPERFAMILY TPR-like 238 361 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2812 - - ccaj:109796654 784.637