Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2750 ATGAGAGTAGTTTATGCACAAAAAGAAAAGTGGGTGAAAGCACAATTACAGAGAGAGAAAGTTCGTGGAAACAACCTTCACCGTTCATCAATTCCACTGATACTGACACCCACACGCTCATCCATTTCCACTCATTCACTCTCTCTCAACCTCTTCAAGGATAAAGAATTCATGGGTGGATCACATTCAAAACGGAGAGGCTCTAGAAGCTCTAGGCAGCGTTCTTCATCATCTTCAAGGTCAAATCCTATGTTTCCTCAATATCAATCTCCTTATTTGCCACAACCACAAGATCATGGGGTAATGGGGTATAATTATGAGACTCCGCCTCCTCCTCAAAGCTATGGTGGTAGTGTTGCTCATCAACAAAGTAAGAGTTCCGACAAGAAGTTTACAAGGATAGGTGATAATTATACTAGTTTGGAACAGGTAACTGAGGCTCTGGCAAGTGCTGGTTTAGAGTCTTCCAATCTCATTGTTGGTATCGATTTTACAAAAAGCAATGAGTGGACAGGTGCAAGGTCTTTTCAAAGGAAATGCCTTCATCACATCGGGCATGAACAAAATCCCTATGAACAAGCTATATCTATCATTGGGAAAACACTGTCCTCCTTTGATGAGGATAACTTGATTCCTTGTTTTGGATTCGGAGATGCTTCAACACACGACCAAGAAGTTTTTAGTTTCAATGCCGAGGATAGATTTTGTCATGGGTTTGAAGAAGTGTTGTCACGTTATAGAGAATTGGTCCCTCAATTAAGGCTTGCAGGACCCACATCATTCGCCCCTGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGAAGGCCAATACCATGTTTTATTGATTATAGCAGATGGGCAGGTGACAAGAAGTGTTGACACTGAGCGTGGGCAATTGAGTACACAAGAAAGAAAAACTGTAGAAGCAATTGTGAAAGCTAGTGAATATCCCCTGTCAATTATACTAGTTGGAGTTGGAGATGGGCCATGGGACATGATGAAAGAATTTGACGATAACATACCTGCTCGAGCATTTGATAATTTCCAGTTTGTGAATTTCACCGAATTAATGTCAAAGAATATGGATCGGTCTAGAAAGGAAGCCGAGTTTGCACTTTCTGCGTTAATGGAAATACCTTCGCAGTACAAGGCAACACTAGAACTTAATATATTGAGCAATCGTAGAAGGAATGATATACATAGGATTCCTCTACCACCACCTCAATATGGTACATCGTCTTTCAACACCCCAAAATCTTCCAATCAAAACAATTTTCGCCCCAGTGCGCCATCTCACAACAAACCAAGTGTTATCACGAACCCACATGCAAGTTCTGCTTCTGATAATCAGTTTTGTCCCATTTGCCTTTCCAATCCGAAGGATATGGCCTTTGGTTGCGGACATCAGACATGCTGCGAGTGCGGTCAAGATCTTGAGCTATGCCCCATTTGCAGGAGTAACATTGATACTAGAATAAAGCTTTATTAG 1494 0.415 MRVVYAQKEKWVKAQLQREKVRGNNLHRSSIPLILTPTRSSISTHSLSLNLFKDKEFMGGSHSKRRGSRSSRQRSSSSSRSNPMFPQYQSPYLPQPQDHGVMGYNYETPPPPQSYGGSVAHQQSKSSDKKFTRIGDNYTSLEQVTEALASAGLESSNLIVGIDFTKSNEWTGARSFQRKCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFNAEDRFCHGFEEVLSRYRELVPQLRLAGPTSFAPVIEMAITIVEQSEGQYHVLLIIADGQVTRSVDTERGQLSTQERKTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTELMSKNMDRSRKEAEFALSALMEIPSQYKATLELNILSNRRRNDIHRIPLPPPQYGTSSFNTPKSSNQNNFRPSAPSHNKPSVITNPHASSASDNQFCPICLSNPKDMAFGCGHQTCCECGQDLELCPICRSNIDTRIKLY* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2750 497 MobiDBLite consensus disorder prediction 405 435 - -
Psa5g2750 497 SUPERFAMILY RING/U-box 448 493 - -
Psa5g2750 497 PANTHER RING-FINGER PROTEIN 58 497 - -
Psa5g2750 497 SMART VWA_4 155 358 IPR002035 -
Psa5g2750 497 ProSiteProfiles Zinc finger RING-type profile. 454 487 IPR001841 -
Psa5g2750 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 433 497 IPR013083 -
Psa5g2750 497 Pfam Zinc finger, C3HC4 type (RING finger) 451 492 - -
Psa5g2750 497 MobiDBLite consensus disorder prediction 72 87 - -
Psa5g2750 497 SUPERFAMILY vWA-like 157 339 IPR036465 -
Psa5g2750 497 CDD RING-HC_RGLG_plant 454 497 IPR045317 GO:0061630|GO:0070534
Psa5g2750 497 MobiDBLite consensus disorder prediction 58 87 - -
Psa5g2750 497 Pfam Copine 180 394 IPR010734 -
Psa5g2750 497 MobiDBLite consensus disorder prediction 410 435 - -
Psa5g2750 497 PANTHER COPINE FAMILY PROTEIN 1 58 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2750 Psa-Chr5 208873687 208877907 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2750 K16280 - gmx:100790800 683.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2750 5 208873687 208877907 Psa5g2750 5 208873687 208877907 ECH