Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2707 ATGGGTAGCGGTGAAATGGGAGTTGCAGAGAGCGACGGTGCGTCACTACCGTCAATCGGAGCCGACGCAATGAAGCGAAGAGTAACCTACTTCTACGAACCAACAATCGGCGATTACTACTACGGTCAAGGCCACCCAATGAAACCCCACCGAATACGCATGGCTCATAACCTCGTCATCCACTACGCACTTCACCGTCGTATGCAAATCAACCGTCCTTTCCTCGCCGGTCCCGAAGACATCCGCCGTTTTCACGCCGACGACTACGTCGACTTCCTTGCCTCCGTTTCGCCTGAGATTCTCTCCGAGAATTCTCACTCTCACTACCGTCAACTCAAGCGGTTCAATGTTGGTGAAGATTGTCCCGTTTTCGATGGACTTTTTCCGTTCTGCCAGGCCTCTGCTGGTGGATCCATTGGTGCTGCTGTTAGACTTAACCGCGGTGATGCTGATATTGCTATCAATTGGGCTGGAGGGTTGCATCATGCTAAGAAAGCTGAAGCCTCGGGGTTTTGCTATGTTAATGACATTGTTCTTGGTATTCTCGAGCTTCTTAAAGTTCATAGGCGTGTGGTGTATGTTGATATTGATGTCCACCACGGAGATGGTGTTGAGGAGGCATTTTACACTACTGATAGAGTGATGACAGTGTCTTTTCACAAGTTTGGCGATTTTTTCCCGGGAACTGGGCATATTAAAGACACTGGGGTGGGCTCTGGAAAAGACTATGCTGTAAATGTTCCTTTGAATGATGGAATGGATGATGAGAATTTCCGCGCTCTGTTCCGTCCCATCATGCAAAAAGTCATGGACGTTTATCAACCCGATGCAGTTGTTCTTCAATGTGGAGCTGATTCATTGTCTGGTGATAGGTTGGGTTGCTTCAACTTGTCTGTGAAGGGTCATGCAGACTGCCTTCGGTTCCTTAGATCTTTCAATGTTCCTCTAATGGTCTTGGGTGGGGGAGGATACACAGTACGGAATGTTGCTCGTTGTTGGTGTTATGAGACAGCAGTGGCAGTAGGAGTGGAGCCTAGTAATAAGTTGCCATACAACGAGTATTATGAATATTTTGGCCCAGACTATACACTTCACGTTGAACCAAACAACATGGAGAACCTAAACACACCCAAGGATATGGAAAAGATCAGGAACATGTTACTTGAACAAATTTCCAGACTTCCTCATGCACCCAGTGCACCTTTTCAAACAACACCGCCAGTTATACAAGTTCCAGAAGAGGAAGACGAGGACATGGATATAAGACCAAAACCTCGCATATGGAATGGTGACGATTATGATTCTGAAGACGATGATGAATATGAAGATGAGAAGGCCAGTATAAGGAGCTTAAATTTATCTGCCCGTATGAGGCGTTCAGCAGTTGATATGGAAGAAGACAAGCCAGTAGTTAAGCCTGACGTGCATTCGTCCTCGTCGTCCTAA 1446 0.4675 MGSGEMGVAESDGASLPSIGADAMKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLVIHYALHRRMQINRPFLAGPEDIRRFHADDYVDFLASVSPEILSENSHSHYRQLKRFNVGEDCPVFDGLFPFCQASAGGSIGAAVRLNRGDADIAINWAGGLHHAKKAEASGFCYVNDIVLGILELLKVHRRVVYVDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDTGVGSGKDYAVNVPLNDGMDDENFRALFRPIMQKVMDVYQPDAVVLQCGADSLSGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPSNKLPYNEYYEYFGPDYTLHVEPNNMENLNTPKDMEKIRNMLLEQISRLPHAPSAPFQTTPPVIQVPEEEDEDMDIRPKPRIWNGDDYDSEDDDEYEDEKASIRSLNLSARMRRSAVDMEEDKPVVKPDVHSSSSS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2707 481 MobiDBLite consensus disorder prediction 459 473 - -
Psa5g2707 481 CDD HDAC_classI 31 340 - -
Psa5g2707 481 PANTHER HISTONE DEACETYLASE 12 443 - -
Psa5g2707 481 MobiDBLite consensus disorder prediction 395 481 - -
Psa5g2707 481 PANTHER HISTONE DEACETYLASE 6 12 443 - -
Psa5g2707 481 Pfam Histone deacetylase domain 45 338 IPR023801 -
Psa5g2707 481 PRINTS Histone deacetylase superfamily signature 158 181 IPR000286 -
Psa5g2707 481 PRINTS Histone deacetylase superfamily signature 190 205 IPR000286 -
Psa5g2707 481 PRINTS Histone deacetylase superfamily signature 275 285 IPR000286 -
Psa5g2707 481 Gene3D Histone deacetylase domain 18 405 IPR037138 -
Psa5g2707 481 PIRSF HDAC_I_euk 10 476 IPR003084 GO:0004407|GO:0016575
Psa5g2707 481 PRINTS Histone deacetylase signature 47 64 IPR003084 GO:0004407|GO:0016575
Psa5g2707 481 PRINTS Histone deacetylase signature 80 98 IPR003084 GO:0004407|GO:0016575
Psa5g2707 481 PRINTS Histone deacetylase signature 115 132 IPR003084 GO:0004407|GO:0016575
Psa5g2707 481 PRINTS Histone deacetylase signature 136 156 IPR003084 GO:0004407|GO:0016575
Psa5g2707 481 PRINTS Histone deacetylase signature 177 193 IPR003084 GO:0004407|GO:0016575
Psa5g2707 481 PRINTS Histone deacetylase signature 236 249 IPR003084 GO:0004407|GO:0016575
Psa5g2707 481 PRINTS Histone deacetylase signature 253 271 IPR003084 GO:0004407|GO:0016575
Psa5g2707 481 MobiDBLite consensus disorder prediction 417 431 - -
Psa5g2707 481 SUPERFAMILY Arginase/deacetylase 26 393 IPR023696 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2707 Psa-Chr5 205622505 205629137 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2707 K06067 - gmx:100801159 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2707 5 205622505 205629137 Psa5g2707 5 205622505 205629137 ECH