Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2706 ATGTTGACTCAGTTTCAGTGGCTCCACTCTGAACTAACCAACGTTTGCAAGTCTCTATTTCGTGTGAAGCAGTTACATGCTTGTCTTTTGAAAACCCATCTCTCACAAGACCCTTTTTATGCAACTCAAATCATTAGACTTTATGCATTTAACAATCACATTAACTATGCCTATCATGTGTTCGATAAAACTTCCTCCCGAAGTGTCTACCTTTGGAATTCCATGATTCGAGCTCTTGCCAAGACTCAAAGATTTACCAATGCAATCTCTCTATTTAGAACCATGCTTGAGTCTGACATAAGGCCTGATAATTATACTTATGCTTGTGTTATACGTGCATGCTCTGACAATTTTGATTTTGGTATGTTAAGACTTGTTCATGGAAGTGCTGTATCTGCAGGGTTGAGACTGGACCCTATTTGTTGCAGTGCACTTGTGAGTGCTTATTCAAAACTTGGTCTTGTTCATCAAGCGTGTAGCGTGTTTAATGGGATTGATGAGCCGGATTTAGTTTTGTGGAACTCGTTGATTTCTGCTTATGTGTGTTCTGGTATGTGGGATATAGGGATTCAAATGTTTAGCTCAATGAGACTTTCTGGGAAGAAGCCCGATGAGTATACAGTGGCTGGATTACTTGTGGGTGTTGTAGATTCTAGCTTGCTCAGCATTGGCCAAGGATTACATGGTTTAAGTCAAAAGAATGGGCTTGATTCTGATTCTCATGTAGGTAGTTTACTGGTGAGTATGTACTTGAGATGTAAGTGCATGGACTCAGCTTATAGAGTCTTTTGTAGTATTTTCAATCCTGATTTGGTTACATGGTCGGCTCTAATAGCTGGGTATTCTCAGTGTGGGGAGTATCAAAAAGCATTGCTCTTTTTCAAGAAATTAAACACGGAGAGCAAGAAACCGGATTCTGTTTTGATTGCTACTGTGTTGGCTTCTATAGCTCAGACAGCGAATGTAGTACCAGGATGTGAGGTACATGGTTACATTCTTCGGTATGGATTGGAATCAGATGTTAAGGTCTCCTCAGCTCTCATAGACATGTATTCAAAGTGTGGTTTCCTAAACTTGGGAACTCGTGTGTTCAAGATGATGCCTGAACGGAATATAATTTCTTATAATTCAATAATTTTGGCTCTTGGCTTGCATGGACGTGCGTCCAAGGCTTTTTTGATGTTTGATGAGATACTAGAGAAAGGATTAGTACCTGATGAAGCAACATTCTCTGCTCTCCTTTGTGCTTGTTGTCATGCTGGCCTGGTCAAAGACGGCCGAGAGATTTTCCAGAGAATGAAAGACGAGTTCAACATCAAAGCTAGACCTGAGCATTATGTTTACATGGTGAAGCTTCTTGGCAGTGCTGGGGAGTTAGAAGAGGCCCACTCTCTCACTCAGTCCTTACCTGAACCGGTAGACAAGGCCATTCTAGGAGCCTTATTATCATGCTGTGATTCTTATGGAAATTCTGAGTTGGCAGAAACTATAGCTCAGCAGATTTTTAAAAGTAATCCTGCTGACAATGTTTACAAGGTTATGCTTTCGAACATATATGCTGGGGATGAGAGGTGGGATGATGCTAAGAAGTTGAGGGATAAAATAACAGGAGGTACGAAGAAAATGCCTGGAGTTAGTTGGATCGAAGGCAATTATTATTAA 1662 0.4073 MLTQFQWLHSELTNVCKSLFRVKQLHACLLKTHLSQDPFYATQIIRLYAFNNHINYAYHVFDKTSSRSVYLWNSMIRALAKTQRFTNAISLFRTMLESDIRPDNYTYACVIRACSDNFDFGMLRLVHGSAVSAGLRLDPICCSALVSAYSKLGLVHQACSVFNGIDEPDLVLWNSLISAYVCSGMWDIGIQMFSSMRLSGKKPDEYTVAGLLVGVVDSSLLSIGQGLHGLSQKNGLDSDSHVGSLLVSMYLRCKCMDSAYRVFCSIFNPDLVTWSALIAGYSQCGEYQKALLFFKKLNTESKKPDSVLIATVLASIAQTANVVPGCEVHGYILRYGLESDVKVSSALIDMYSKCGFLNLGTRVFKMMPERNIISYNSIILALGLHGRASKAFLMFDEILEKGLVPDEATFSALLCACCHAGLVKDGREIFQRMKDEFNIKARPEHYVYMVKLLGSAGELEEAHSLTQSLPEPVDKAILGALLSCCDSYGNSELAETIAQQIFKSNPADNVYKVMLSNIYAGDERWDDAKKLRDKITGGTKKMPGVSWIEGNYY* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2706 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 371 405 IPR002885 -
Psa5g2706 553 Gene3D Tetratricopeptide repeat domain 425 550 IPR011990 GO:0005515
Psa5g2706 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Psa5g2706 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Psa5g2706 553 Gene3D Tetratricopeptide repeat domain 325 424 IPR011990 GO:0005515
Psa5g2706 553 Gene3D Tetratricopeptide repeat domain 122 222 IPR011990 GO:0005515
Psa5g2706 553 Gene3D Tetratricopeptide repeat domain 225 324 IPR011990 GO:0005515
Psa5g2706 553 Gene3D Tetratricopeptide repeat domain 8 121 IPR011990 GO:0005515
Psa5g2706 553 Pfam PPR repeat 141 163 IPR002885 -
Psa5g2706 553 Pfam PPR repeat 272 297 IPR002885 -
Psa5g2706 553 Pfam E motif 488 549 IPR046848 -
Psa5g2706 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 68 102 IPR002885 -
Psa5g2706 553 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 406 436 IPR002885 -
Psa5g2706 553 SUPERFAMILY TPR-like 65 530 IPR011990 GO:0005515
Psa5g2706 553 Pfam PPR repeat family 371 419 IPR002885 -
Psa5g2706 553 Pfam PPR repeat family 168 213 IPR002885 -
Psa5g2706 553 Pfam PPR repeat family 68 114 IPR002885 -
Psa5g2706 553 TIGRFAM PPR: pentatricopeptide repeat domain 272 305 IPR002885 -
Psa5g2706 553 TIGRFAM PPR: pentatricopeptide repeat domain 409 436 IPR002885 -
Psa5g2706 553 TIGRFAM PPR: pentatricopeptide repeat domain 373 407 IPR002885 -
Psa5g2706 553 TIGRFAM PPR: pentatricopeptide repeat domain 171 205 IPR002885 -
Psa5g2706 553 TIGRFAM PPR: pentatricopeptide repeat domain 70 103 IPR002885 -
Psa5g2706 553 PANTHER OS01G0545900 PROTEIN 5 548 - -
Psa5g2706 553 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 5 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2706 Psa-Chr5 205547937 205550489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2706 29 549 Glycoside Hydrolase AT3G49170 30.057 4.12e-77 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2706 - - gmx:100820049 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2706 5 205547937 205550489 Psa5g2706 5 205547937 205550489 ECH