Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2571 ATGCCTTCAACTTCAATTTCAGCCACCACATTATGTTTACACTTTCTGTTAATGCTACTGCTTTGTTCATTCAATCTTCAACCAAGTTTTGGTTTCAGTTCACAAGAATATCACGAGGCTCTTGAAAAATCTATTCTTTTCTTTGAAGGACAGCGTTCTGGAAGATTGCCATCCAACCAGAGGCTAACGTGGAGGGCTGATTCTGGATTATCAGATGGCTCTTCTTATCATGTGGACTTAGTTGGTGGTTATTATGATGCTGGTGACAATGTCAAGTTTGGGCTTCCGATGGCTTTTACAACAACACTATTAGCATGGAGTGTCATTGAATTTGGAAACTCAATGCATGATCAGATTGACAATGCTCGAGAAGCTATCCGGTGGAGCGCAGATTATCTTCTTAAGGCCGCCACCACAACTCCAGACACATTATATGTCCAAGTTGGAGAACCTAACTTGGATCATAGGTGTTGGGAAAGGCCAGAGGATATGGACACTCCGCGGAATGTGTATAAGGTATCACCTCAAAACCCGGGTTCTGATGTCGCGGCCGAGACTGCAGCTGCATTGGCAGCTTCATCACTAGTATTCAAAGACTCTGATCCAGCCTATTCCTCAAAATTGCTTCGAGCAGCCATCAATGTATTCAATTTTGCAGACCGTTACAGAGGCTCTTACAGTGACTCTCTTAATTCCATTGTCTGTCCGTTTTATTGCTCCTACTCTGGATACCATGATGAGTTACTTTGGGGTGCATCATGGATTTACAAAGCTTCTGGAATAAATTCCTACATGGAGTTCATACAATCCAACGGTCACATATTAGGCGCCGACGATGATGGTTACACTTTCAGTTGGGATGACAAACGACCTGGAACTAAAATATTACTTTCAAAGGATTTCTTGGAGAAAAATTCTGAAGAATTTCAGTTATACAAGGCACATGCAGACAATTACATCTGTTCTTTAGTGCCAGGAACTCCTGGTTTCCAGGCTCAGTATACCCCAGGTGGAGTTCTGTACAAAGATAGTTCAAGCGATTTACAGTATGTGACATCTACATCTTTCCTTCTCTTAACATACGCAAAGTATCTCAACTCAAATGGAGGTGTTGTCTCGTGTGGAACATCAAAAGTCACAGGACAAAACCTAATCAACTTAGCAAAAAAACAAGTTGATTACATTTTGGGGAATAATCCAAAAGAGATGTCTTATATGGTTGGTTTTGGAGAGAGGTATCCAAATCATATTCATCATAGAGGTTCCTCTTTACCTTCCATTCACCAGCAGCCTCAGAAGATTTCTTGTAACAATGGGTTTCAATACCTGAATTCAGGGTCACCAAATCCAAATGTTCTTGTTGGAGCCGTTGTTGGTGGTCCAGATAGCAGTGACAATTTTTCTGATGATAGAAATAATTATCAACAGTCAGAGCCAGCAACTTATATTAATGCTCCTTTTGTTGGTGCTCTTGCTTTTTTCTCTGCTCAGTAA 1494 0.4103 MPSTSISATTLCLHFLLMLLLCSFNLQPSFGFSSQEYHEALEKSILFFEGQRSGRLPSNQRLTWRADSGLSDGSSYHVDLVGGYYDAGDNVKFGLPMAFTTTLLAWSVIEFGNSMHDQIDNAREAIRWSADYLLKAATTTPDTLYVQVGEPNLDHRCWERPEDMDTPRNVYKVSPQNPGSDVAAETAAALAASSLVFKDSDPAYSSKLLRAAINVFNFADRYRGSYSDSLNSIVCPFYCSYSGYHDELLWGASWIYKASGINSYMEFIQSNGHILGADDDGYTFSWDDKRPGTKILLSKDFLEKNSEEFQLYKAHADNYICSLVPGTPGFQAQYTPGGVLYKDSSSDLQYVTSTSFLLLTYAKYLNSNGGVVSCGTSKVTGQNLINLAKKQVDYILGNNPKEMSYMVGFGERYPNHIHHRGSSLPSIHQQPQKISCNNGFQYLNSGSPNPNVLVGAVVGGPDSSDNFSDDRNNYQQSEPATYINAPFVGALAFFSAQ* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2571 497 Gene3D - 33 497 IPR012341 GO:0005975
Psa5g2571 497 SUPERFAMILY Six-hairpin glycosidases 34 496 IPR008928 GO:0005975
Psa5g2571 497 PANTHER ENDO-1,4-BETA-GLUCANASE 15 496 - -
Psa5g2571 497 Pfam Glycosyl hydrolase family 9 37 491 IPR001701 GO:0004553|GO:0005975
Psa5g2571 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 467 485 IPR033126 -
Psa5g2571 497 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 394 420 IPR018221 -
Psa5g2571 497 PANTHER ENDOGLUCANASE 4 15 496 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2571 Psa-Chr5 197900277 197902886 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2571 34 495 Glycoside Hydrolase AT1G02800 63.420 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2571 - - gmx:732658 845.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2571 5 197900277 197902886 Psa5g2571 5 197900277 197902886 ECH