Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2540 ATGAGCAACTTTGCTGTTTCTCCTTCATCTTCATCAACGATGCTGTCTCCCAAAAAATACGATGTTTTTCTTAGCTTTCGAGGCGAAGATACACGTAACAACATCACAAGCCATCTTTATGAAGCACTGAACCAAAAGAGAGTTGAAACCTATATAGACTACAAGCTAGAAAAAGGAGAGGGAATTGGACCATCACTCATCACAGCCATTGAAGAGTCACATGTTTCTGTTGTCATCTTCTCAGAAAACTATGCTTCCTCCAAGTGGTGTTTGGATGAAATTGTGAAAATCATGGAATGCAAGAAGGATCGAGGACAGATTGTGATACCTGTGTTCTACAAAACAGATCCATCGCATGTGAGAAACCAGAGAGGAACATATGAGAAATGGTTTAAGAAACATGAGTTAGATCATAGGTTGTTCAATTGGAGAAGTGCTCTCACAGAAGCAGCTAATTTGTCTGGTTGGGATTTTCAAACTTATAGGATAATACCGACTCGAATTTCGTTGATCACATGGTCCATAAGTACTATTTGCTTCTAA 543 0.3904 MSNFAVSPSSSSTMLSPKKYDVFLSFRGEDTRNNITSHLYEALNQKRVETYIDYKLEKGEGIGPSLITAIEESHVSVVIFSENYASSKWCLDEIVKIMECKKDRGQIVIPVFYKTDPSHVRNQRGTYEKWFKKHELDHRLFNWRSALTEAANLSGWDFQTYRIIPTRISLITWSISTICF* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2540 180 Pfam TIR domain 19 154 IPR000157 GO:0007165
Psa5g2540 180 Gene3D - 17 179 IPR035897 -
Psa5g2540 180 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 156 IPR035897 -
Psa5g2540 180 PANTHER TMV RESISTANCE PROTEIN N-LIKE 15 162 - -
Psa5g2540 180 ProSiteProfiles TIR domain profile. 18 179 IPR000157 GO:0007165
Psa5g2540 180 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 162 - -
Psa5g2540 180 SMART till_3 19 153 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2540 Psa-Chr5 192839137 192840594 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2540 17 139 Miscellaneous Gene Families AT5G44900 38.211 9.17e-26 97.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2540 - - gmx:100809480 235.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2540 5 192839137 192840594 Psa5g2540 5 192839137 192840594 ECH