Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2456 ATGTGCTCAATCTCATCCTATGCGACATGTTCATCAACGCTTCTAACTTCTTCGTCTTCTTCCTCCTGTTCATTCCCTTGTTCCTCTCTCAAAACCACCATTCTTACCCTCCCAACCACTATCTCTAACGTATCCGTATCAGCCACACCCAAACATGTCTGGACCCGAACACCCCGTTCTCCAGTTTCCCACACCAACAAACTACAACGCCGTACCAGAACCCAGCAACAACAATACGAACCCTCTTATCTAGACCGCAGCGTAGACATGAAGGAACTCTTAACCTCAATCGGACAAACCCACAACGTCGAACAGCTCTACGCACTCATGTCCCCTTTCAATAACAGACAACTTTCAATTCGTTTCATGGTTTCCATTCTCTCCCGTGAACCCGATTGGCAACGCTCTATCGCCATTCTCGATTGGATGAATGAAAAAGCTCGATATTCACCTTCACTCTCCGCTTACAACGTCGTTCTACGTAACGTACTTCGTGCTAAACAGTGGCACTTTGCACACGGACTGTTCGATGAAATGCGTCAAAAGGGTCTTTCCCCTGATAGATACACTTACTCCACACTCATTACATGTTTTAGTAAACAAGGTTTGTTTGATTCCTCTTTCTTTTGGCTACAACAGATGGAACGTGACAAAATTTCTGGTGACCTTGTTTTGTATAGTAATTTGATTGAGTTTGCGCGGAAGCTGTGTGATTATTCCAAAGCCATTTCGATTTTCAATACTTTGAAAGCTTCTGCTAATATTGCTCCTGATCTTATAGCTTATAATACCATGATTTGTGTGTTTGGGAAGGCTAAGCTCCTTCGGGAAGCTCGTCTTCTTCTTCAAGAGATGAGGGAGAAGGGTGTTAGCCCGAATACTGCTAGTTACTCGACGCTTCTTGCGATTTATGTTGACAATCAGAAGTTTGTCGAGGCGCTTTCTTTGTTTTCGGAAATGAATGAACTTAAATGTCCGATTGATCTTACTACTTGTAATATCATGATTGATGTTTATGGTCAGCTTCAAATGATCAAGGAAGCTGATTGCTTCTTCTGGGGTATGAAGAAAATGGGAATTGAACCCAATGTGGTTAGTTACAACACTATCTTGAGGGTTTATGGAGAGGCGGAGCTATTTGGGGAAGCGGTTCATCTTTTTAGTTTGATGCAAAGGAAAGGTATACCACAGAATGTTGTCACTTACAATACCATGATTAATATCTATGGCAAATCTCTTGAGCATGAGAAGGCGACGAATCTCATTCAAGAAATGCAGAGTAGAGGTATTCAACCAAATGCTATCACTTATTCAACCATAATATCTATATGGGAAAAGGCAGGGAAATTGGACAGGGCAGCCATGCTGTTTCACAAGTTAAGGACTTCCGGAGTTAAAATTGATGAGGTTCTATATCAAACAATGATTGTCGCGTATCAGAAAGCTGGATTAGTTGCTCATGCCAAAAGGCTACTTAATGAGCTCAAGCAACAGGATAATGTTTCCAGGGAGACAGCAATCACAATACTGGCCAAAGCCGGTAAAGTTGACGAGGCTATGTGGGTTTTCCGACAGGCTTTTGACGCAGGAGAGGTGAAAGATATATCTGTATTTGGGTGCATCATTGATATTTTCTCAATGGACAGAAAGTATGCACATGTGGTTGAAGTGTTTGAGAAGATGAGAGAGGTTGGACATTTTCCCGACTCTAATGTTATTGCTCTGGTGCTAAATGCTTTTGGAAAGCTTCGCCAATTTGAGAGAGCAGATGCTTTATATAAACAGATGTATGAAGAAGGGTGTGTTTTCTCCGACGAAGTTCATTTTCAAATGCTTGGTTTATATGGCGAGAGAAGGGATTTCAAGATGGTGGAATCATTGTTTGAGAAGCTAGATTCTTATCCCAATATCAACAAGAAGGAGTTGCATTTTGTTGTCGCCCACATTTACGAAAGAGCAGATAGATTTAATGATGCTTCCCGAATCATGAGCAGGATGAAATCACAAAGCAAAAAGAAATGA 2022 0.4154 MCSISSYATCSSTLLTSSSSSSCSFPCSSLKTTILTLPTTISNVSVSATPKHVWTRTPRSPVSHTNKLQRRTRTQQQQYEPSYLDRSVDMKELLTSIGQTHNVEQLYALMSPFNNRQLSIRFMVSILSREPDWQRSIAILDWMNEKARYSPSLSAYNVVLRNVLRAKQWHFAHGLFDEMRQKGLSPDRYTYSTLITCFSKQGLFDSSFFWLQQMERDKISGDLVLYSNLIEFARKLCDYSKAISIFNTLKASANIAPDLIAYNTMICVFGKAKLLREARLLLQEMREKGVSPNTASYSTLLAIYVDNQKFVEALSLFSEMNELKCPIDLTTCNIMIDVYGQLQMIKEADCFFWGMKKMGIEPNVVSYNTILRVYGEAELFGEAVHLFSLMQRKGIPQNVVTYNTMINIYGKSLEHEKATNLIQEMQSRGIQPNAITYSTIISIWEKAGKLDRAAMLFHKLRTSGVKIDEVLYQTMIVAYQKAGLVAHAKRLLNELKQQDNVSRETAITILAKAGKVDEAMWVFRQAFDAGEVKDISVFGCIIDIFSMDRKYAHVVEVFEKMREVGHFPDSNVIALVLNAFGKLRQFERADALYKQMYEEGCVFSDEVHFQMLGLYGERRDFKMVESLFEKLDSYPNINKKELHFVVAHIYERADRFNDASRIMSRMKSQSKKK* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2456 673 Pfam PPR repeat 576 601 IPR002885 -
Psa5g2456 673 Pfam PPR repeat 507 525 IPR002885 -
Psa5g2456 673 Pfam PPR repeat 470 497 IPR002885 -
Psa5g2456 673 Pfam PPR repeat 537 565 IPR002885 -
Psa5g2456 673 MobiDBLite consensus disorder prediction 55 80 - -
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 398 432 IPR002885 -
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Psa5g2456 673 SUPERFAMILY HCP-like 232 423 - -
Psa5g2456 673 Gene3D Tetratricopeptide repeat domain 500 673 IPR011990 GO:0005515
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 258 292 IPR002885 -
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 328 362 IPR002885 -
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 568 IPR002885 -
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 152 186 IPR002885 -
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 433 467 IPR002885 -
Psa5g2456 673 TIGRFAM PPR: pentatricopeptide repeat domain 331 364 IPR002885 -
Psa5g2456 673 TIGRFAM PPR: pentatricopeptide repeat domain 537 569 IPR002885 -
Psa5g2456 673 TIGRFAM PPR: pentatricopeptide repeat domain 155 187 IPR002885 -
Psa5g2456 673 TIGRFAM PPR: pentatricopeptide repeat domain 365 398 IPR002885 -
Psa5g2456 673 TIGRFAM PPR: pentatricopeptide repeat domain 296 328 IPR002885 -
Psa5g2456 673 TIGRFAM PPR: pentatricopeptide repeat domain 400 434 IPR002885 -
Psa5g2456 673 TIGRFAM PPR: pentatricopeptide repeat domain 576 603 IPR002885 -
Psa5g2456 673 TIGRFAM PPR: pentatricopeptide repeat domain 189 222 IPR002885 -
Psa5g2456 673 TIGRFAM PPR: pentatricopeptide repeat domain 435 469 IPR002885 -
Psa5g2456 673 TIGRFAM PPR: pentatricopeptide repeat domain 261 294 IPR002885 -
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 293 327 IPR002885 -
Psa5g2456 673 Gene3D Tetratricopeptide repeat domain 426 499 IPR011990 GO:0005515
Psa5g2456 673 Gene3D Tetratricopeptide repeat domain 353 425 IPR011990 GO:0005515
Psa5g2456 673 Pfam Pentatricopeptide repeat domain 315 376 IPR002885 -
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 363 397 IPR002885 -
Psa5g2456 673 PANTHER OS03G0856100 PROTEIN 17 669 - -
Psa5g2456 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 187 221 IPR002885 -
Psa5g2456 673 Pfam PPR repeat family 257 301 IPR002885 -
Psa5g2456 673 Pfam PPR repeat family 151 199 IPR002885 -
Psa5g2456 673 Pfam PPR repeat family 398 441 IPR002885 -
Psa5g2456 673 Gene3D Tetratricopeptide repeat domain 235 346 IPR011990 GO:0005515
Psa5g2456 673 Gene3D Tetratricopeptide repeat domain 108 234 IPR011990 GO:0005515
Psa5g2456 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN, CHLOROPLASTIC 17 669 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2456 152 634 Glycosyltransferase AT1G05670 23.313 1.17e-40 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2456 - - mtr:MTR_3g083680 1089.72