Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2416 ATGACTGCAAAGTTTGATTCAATGTTTGCTTCTGAACCTCACAAGATATCCGGAGCTACATCTACAACACCTACCAGTGGTGGCCAAAAGCTCTCTATGTTTGCTGCCAAATCTGGATTTGTCATCCCCAAAAACAAGTTATTAGGATCGTTAGTTCCCATTTTCCGAGGGGCTAAAAAAGACGGGGTATCTGGAGTCATCAATGAAGAAAATTCAAAACAAATTGAGAGGAAATCAAGATGGGGGCCTGATCCGACACAGGATGCATCTGTCAGGAGGGCGAAGGTTTTGGCGTTGCAGATTCGAGTGGATCAAATTTCAAAGCAGTTGGAATCAGAAAATCTAGAGATTGGAGCTGCACAGAACTCACCATTGGTGGATGAGAACCCAGATAAAAGCAAGTCTGGCTCTCAAATTAATAGCAAGAAGTTAGAAATGCTTGAACTCGAAAAACGGGAAACAATAGGTGAAATACTAAAATTAGATCCCAGTTACAAGCCTCCGCCTGGTTTTAAACCACTGTTAAAAGAACACAATGTTCCTTTGCCTGTCCAAGAATATCCTGGGTACAAATTTATTGGTCTAATATATGGGCCTGAAGGTGATAATCAAAAGCGACTAGAGAGGGAAACTGGCACCAAGATAAAAATTCGTGGAACCAAAGCAGACACAGGAGAGAAAAGTGAAATTAAACCAGGTATTAATGTCCAGTGCAGTTACGAAGAGATGCATGTTAACATATCAGCTGATAGTTTTGATAAAGTGGATGCAGCAATTTCCATCATTGAACTACTAATTTCCTCTGTAACTGGGAGTTCAGCTGCTGGTTCCACACCTTCTGTATCTGTTTCTGGGGATTGCACTAATGATCTGAATCAAAACCAGGACGGACCCCCATCTCATGCAATTTCTCTATCTCTGGAAAACCCGACTGACGGACCCCCATCTCATGCAATTTCTCTATCTCTGGAAAACCCGACTGTGTTTCAACCAGCAGCTACCACACAAATGCAAGGAGATCGCTTTCAATACTCTGGTTCATGGTTTTCAGCTGCTCCATCTCACACCCCTTTATTTGCTTCTGGCAGTGTAGTCCCTCCAAATCCACCACCACACCTTGCTAGAACTCCCCATTTTCCATCACAGACAATGAGCCCTTCAAATATGATTTCAGCTTTTGGTGCTCAACCTACACCTATTACCGGATTCCACCCAATTATTCCAAATCAGCAGTTTTCTATGCAAGCACCACCACCAACACAAATCTTACAACATTCACAATGGACTCAAACAACTCCTTTTGGTCACGTTGGGCCACCAAGAAATCCTTCTGTAATACCTGCACAGAGTTTGTCGGCACCAACAAGTGCTTCCCTTTCATTTCCAGTTCCCTTAAGGCAACCAACACCAACAGGACACCTCCAGACATCAACCCCTCATGGTGTATCTTCTGGACTGAGTGGAGGACCAATGGCTCCACCGGCAGTTCCCCCTGCAAGACCCGTTTCTCTAGGTCCACAATCAGATGTTGAATATAAGCCACCCCAGTCAAATGTGTCAATGATGCCACGACCTGGCAGTATTCATCCACATCATGCAGGAATGTCACCGAGACTACCATCATCTTTAGGACCAATACCAGGAACTGTTCATTCAACTGGAAACCATTTATCAAGACCCGTTTCATTTCCGTCGCCAGGAATATCCCCCTCACTTCCATTAGCTCAACAATCAGGAATACCTAATTCTGCCTCTCATTACACCCACATAAACCCACTGACCTCCACACCTTCAAATTCTGGAAATTTTACTTTTCAAGGACAGCGACCCAATGCAGACTACTATCAAGTGGTTCCCAGACCTAACAGTCAAGCTACTACTCAGGGTGGTACACAAGAGCCACCTTCCGGTCCTCGGCCTCCACCATTTGGGTTTGCTGTGGCTGATCAGCCTTTTCAAAGCTTTCCAAGGGGACAAGTCTCCAACCGGGTGGATCAAACTCAAGCTTATGCCTCTGCTGCTCCTTTTGGTGGAAGACCGGGCTCTGTCTCAATTCCACCCCAACACCCTGCATTTCCCTATACTGGTCAACCTTCACCAAGATCTCAAGTCCCACAAATGGGTATGAGGAACTTCATTCCTACCCCTCAAATGCCAAACTTGCCCAGTCCTGGGGTCCAAAGAGGTATGCACAATCAACAAAGCTATCCTGCTCAGGGAACATGGTCTCTGAATCAGAAGTTTGGCAACAACCCCTCCTTGGCATCCAGTAAGCCAGCGTATCACGCAGACCAAATTTATGATCCCTTTTCACCCACATCTGTTGCATCTCCACACCAGAAAGGTAATCTAGGAAAATGA 2361 0.4519 MTAKFDSMFASEPHKISGATSTTPTSGGQKLSMFAAKSGFVIPKNKLLGSLVPIFRGAKKDGVSGVINEENSKQIERKSRWGPDPTQDASVRRAKVLALQIRVDQISKQLESENLEIGAAQNSPLVDENPDKSKSGSQINSKKLEMLELEKRETIGEILKLDPSYKPPPGFKPLLKEHNVPLPVQEYPGYKFIGLIYGPEGDNQKRLERETGTKIKIRGTKADTGEKSEIKPGINVQCSYEEMHVNISADSFDKVDAAISIIELLISSVTGSSAAGSTPSVSVSGDCTNDLNQNQDGPPSHAISLSLENPTDGPPSHAISLSLENPTVFQPAATTQMQGDRFQYSGSWFSAAPSHTPLFASGSVVPPNPPPHLARTPHFPSQTMSPSNMISAFGAQPTPITGFHPIIPNQQFSMQAPPPTQILQHSQWTQTTPFGHVGPPRNPSVIPAQSLSAPTSASLSFPVPLRQPTPTGHLQTSTPHGVSSGLSGGPMAPPAVPPARPVSLGPQSDVEYKPPQSNVSMMPRPGSIHPHHAGMSPRLPSSLGPIPGTVHSTGNHLSRPVSFPSPGISPSLPLAQQSGIPNSASHYTHINPLTSTPSNSGNFTFQGQRPNADYYQVVPRPNSQATTQGGTQEPPSGPRPPPFGFAVADQPFQSFPRGQVSNRVDQTQAYASAAPFGGRPGSVSIPPQHPAFPYTGQPSPRSQVPQMGMRNFIPTPQMPNLPSPGVQRGMHNQQSYPAQGTWSLNQKFGNNPSLASSKPAYHADQIYDPFSPTSVASPHQKGNLGK* 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2416 786 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 24 781 - -
Psa5g2416 786 PANTHER RNA-BINDING PROTEIN RELATED 24 781 IPR045071 -
Psa5g2416 786 Gene3D K Homology domain, type 1 171 295 IPR036612 GO:0003723
Psa5g2416 786 MobiDBLite consensus disorder prediction 126 141 - -
Psa5g2416 786 MobiDBLite consensus disorder prediction 470 496 - -
Psa5g2416 786 MobiDBLite consensus disorder prediction 69 88 - -
Psa5g2416 786 Gene3D - 91 168 - -
Psa5g2416 786 MobiDBLite consensus disorder prediction 470 484 - -
Psa5g2416 786 MobiDBLite consensus disorder prediction 121 141 - -
Psa5g2416 786 ProSiteProfiles Type-1 KH domain profile. 191 262 - -
Psa5g2416 786 MobiDBLite consensus disorder prediction 1 27 - -
Psa5g2416 786 Pfam KH domain 191 262 IPR004088 GO:0003723
Psa5g2416 786 SMART kh_6 174 267 IPR004087 GO:0003676
Psa5g2416 786 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 178 270 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2416 Psa-Chr5 185419850 185424738 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2416 K13095 - gmx:100777227 903.279