Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2328 ATGTCACTCTCTCACTCTCACAGTGCACTCGCACTCAAATCTCAACTCTTCTCCTTCGCACGTAAGAACCCATTCATTGCAAAGAAACTTCACGCACAAATCATCAAATCTGGTTTTAACCAACACGATCCATTCCCCAAAACTCTCATTGATTCATACGGCAAATGTGGTCTTCTCCAAGATGCACTCAAGCTGTTCGACTCATTGCCTCACAGAGACCATGTTGCTTGGGCTACTGTTCTCTCCGCTTGCAACCTCTCCAACCTCCCATACAAAGCCTTATCCATCTCACGTTCCATTCTCAATGAAGGGTTGCAGCCAGATCACTTTGTTTTCTCTTCCCTCATCAAGGCTTGTGCTAACTTGGGTGATGGTTATATCAAGCAAGGGAAACAACTTCATGCTCGTTTCTTGCTTTCGCCTTACTCTGAAGATGATGTTGTTAAGTCTTCCCTTGTTGATATGTATGCCAAATTTGAGTTGCCTGATTATGGGCGTGCTGTTTTTGATTCGATTTTTACGTTGAATTCAATTTCTTGGACTGCAATGATATCTGGGTATGCGCGAAGTGGACGAAAGGTTGAGGCTTTACGATTGTTTCGTCAATCTCCGTTTAAGAATTTGTATGCTTGGACTGCTTTGATATCTGGGTTGGTTCAGAGTGGGAATGCAACTGATGCGCTTTACTTGTTTGTTGAAATGAGGGGTGAAGGGGTTAGTATTGCTGACCCGTTAGTTCTTTCTAGTGTGGTTGGTGCTTGTGCTAATTCAGCTGTTTGGGAGCTTGGAAAACAGATGCATTGTGTAGTCATAACCCTTGGCTATGAGTCTTGTTTGTTTATAAGTAATGCACTTGTAGATATGTACGCCAAATGCAGTGACCTTGTTGCTGCTAAATATATATTTTGTGAGATGAGAAGAAAGGATGTTGTTTCTTGGACTTCGATAATTGTTGGCACTGCTCAGCATGGGCTGGCTGAGGAGGCCTTGGCTTTGTATGATGACATGGTTTTAGCCGGGGTTAAACCAAATGAGGTGACTTTTGTTGGGTTGATCTATGCCTGCAGTCATGTTGGTCTAGTTAGCAAGGGCCGTGCTTTGTTCAAGTCTATGATCGGAGACTTTGGAATTAGACCGTCTTTGCAGCACTATACTTGTTTACTGGATCTTTTTAGTCGATCGGGATACCTTGATGAGGCAGAGAATCTCATCAGAACAATGCCGTTCAAACCTGATGAACCGACTTGGGCTGCATTACTCAGTGCTTGTAAGCAGCATGGTAACATTAATATGGCAGTTAGAATTGCTGATAGTCTATTGGACTTAAAACCAGAAGACCCTTCCAGCTATATACTGTTATCTAATGTATATGCCGGAGCTGGTATGTGGGAGAATGTTTCCAAGGTGCGGAAGTTAATGGTGGTCAAGGAAGTTAGAAAAGAGCCAGGTTATAGCTCCATTGACTTAGGAAAGGAAAGCCAGGTGTTTTATGCCGGAGAGGCATCTCAACCTATGAAAGATGAGATTCTAGGTTTGATGAGGAAATTAGATGAAGAAATGAGGAAAAGGGGTTATGTTCCTGATACTAGCTCAGTTTTACATGACATGGATCAACAAGAGAAGGAAAGACAACTTTTCTGGCATAGTGAAAGGTTAGCTCTGGCCTATGGGCTTCTTAAGGCTGTTCCAGGGACTACTATACGTATAGTGAAAAATCTTCGTGTTTGTGGAGATTGTCACACTGTGTTGAAGCTCATCAGCACTATAACTAGTAGGGAAATTTATGTTCGGGATCTCAAAAGATATCACCATTTTAAGGATGGGAATTGTTCATGTAATGACTTCTGGTGA 1851 0.4241 MSLSHSHSALALKSQLFSFARKNPFIAKKLHAQIIKSGFNQHDPFPKTLIDSYGKCGLLQDALKLFDSLPHRDHVAWATVLSACNLSNLPYKALSISRSILNEGLQPDHFVFSSLIKACANLGDGYIKQGKQLHARFLLSPYSEDDVVKSSLVDMYAKFELPDYGRAVFDSIFTLNSISWTAMISGYARSGRKVEALRLFRQSPFKNLYAWTALISGLVQSGNATDALYLFVEMRGEGVSIADPLVLSSVVGACANSAVWELGKQMHCVVITLGYESCLFISNALVDMYAKCSDLVAAKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALALYDDMVLAGVKPNEVTFVGLIYACSHVGLVSKGRALFKSMIGDFGIRPSLQHYTCLLDLFSRSGYLDEAENLIRTMPFKPDEPTWAALLSACKQHGNINMAVRIADSLLDLKPEDPSSYILLSNVYAGAGMWENVSKVRKLMVVKEVRKEPGYSSIDLGKESQVFYAGEASQPMKDEILGLMRKLDEEMRKRGYVPDTSSVLHDMDQQEKERQLFWHSERLALAYGLLKAVPGTTIRIVKNLRVCGDCHTVLKLISTITSREIYVRDLKRYHHFKDGNCSCNDFW* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2328 616 Pfam DYW family of nucleic acid deaminases 524 616 IPR032867 GO:0008270
Psa5g2328 616 Gene3D Tetratricopeptide repeat domain 19 129 IPR011990 GO:0005515
Psa5g2328 616 Gene3D Tetratricopeptide repeat domain 130 268 IPR011990 GO:0005515
Psa5g2328 616 Gene3D Tetratricopeptide repeat domain 282 495 IPR011990 GO:0005515
Psa5g2328 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Psa5g2328 616 Pfam E motif 426 487 IPR046848 -
Psa5g2328 616 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 17 604 - -
Psa5g2328 616 PANTHER OS11G0661000 PROTEIN 17 604 - -
Psa5g2328 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 380 414 IPR002885 -
Psa5g2328 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 206 IPR002885 -
Psa5g2328 616 TIGRFAM PPR: pentatricopeptide repeat domain 178 202 IPR002885 -
Psa5g2328 616 TIGRFAM PPR: pentatricopeptide repeat domain 346 380 IPR002885 -
Psa5g2328 616 TIGRFAM PPR: pentatricopeptide repeat domain 311 345 IPR002885 -
Psa5g2328 616 TIGRFAM PPR: pentatricopeptide repeat domain 209 240 IPR002885 -
Psa5g2328 616 TIGRFAM PPR: pentatricopeptide repeat domain 283 311 IPR002885 -
Psa5g2328 616 Pfam PPR repeat 178 202 IPR002885 -
Psa5g2328 616 Pfam PPR repeat 48 69 IPR002885 -
Psa5g2328 616 Pfam PPR repeat 210 239 IPR002885 -
Psa5g2328 616 Pfam PPR repeat 384 407 IPR002885 -
Psa5g2328 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Psa5g2328 616 Pfam PPR repeat family 308 356 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2328 Psa-Chr5 180198986 180200836 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2328 22 616 Glycoside Hydrolase AT3G49170 36.946 3.10e-132 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2328 - - mtr:MTR_3g084440 1111.67