Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2309 ATGGCCATCTTCTCTGCGACGCTAGGCCCTTTCGGTGCCATCTCCTTCCTCTCATCTTCACAATCACAACCACTCGACTCTTCTTATTCTATCCTCAACCAATTCAATTCCCTAAAATACCCCCGCAAGTTCCCACTTTGCCACTGGCATCGACATTATAATCATCACACTTCTAAAATCTCCGTCTCTAGTAACAGTGATACTCAAATTGATGAAGTCGAAACTAGTCTTCTTCCACGCCCTTATGCTCCTAACTCAATGGAGGCTCTTCGCGATGCTCGGAGATCGTCAGATTGGAAGTCTGCAACCGCATACAGAGATAGTAAACTCGTTTACAATGGTAGGGTTGAGGGTTTTAATTCTGGAGGCCTGCGTGTTCGGTTTTACTCTATCATGGGGTTTCTCCCATTCCCACAGTTGAGCACAGTCTATTATTGTAAAGAACCAAATAAACCTATTCAAGATATTGCGAAAGAAATGATTGGATCCATCTTATCAGTAACGGTCATTAAAGTAGATGAGGAGAACAAGAAATTGATCTTATCTGAAAAGGAAGCTACCTGGTCTAAATATTCAAAATATGTCAACATAGGGGACATTTTTGAAGCAAGAATTGGTTCTGTTGAGGACTATGGTGCTTTTGCTTATCTGCGCTTCCCTGACGGTCTTTATCACCTTTCCGGGTTAATACATATCTCAGAAGTGGCATGGGATCTAATTCAAGATGTAAGAGATTTCTTAAGAGAAGGCGAAGAAGTGAAGGTCAAAGTTATTGGTATTGATAGTGTAAAATCGAGGCTTTCACTTTCACTTAAACAGCTAGAAGAAGATCCACTTCTAGAAACTCTGGACAAAGTAATACCACAGAATGGTTTAGCTGTTTCTGGTTCTTTCAGCGGTAATAGCAGTCGCATTGATCCCCTACCAGGGCTTGATACAATTCTTGAGGAGCTACTGCAGGAAGATGGCATATTAGATGCAAGAATCAGCCGTCAGGGGTTTGAAAAACGAGTGGTCTCACAAGACTTGCAGCTTTGGCTTTCTAATGCACCTCCCTTGGACCAAAGGTTTACTCTCCTTGCTCGAGCTGGAAGACAGGTGCAGGAGATACTTCTGAAAACATCACTTGATCAGGAAGGCATAAAAAGGGCAATACAACAAGTATTGGAGCGTGTTCCCTGA 1182 0.4247 MAIFSATLGPFGAISFLSSSQSQPLDSSYSILNQFNSLKYPRKFPLCHWHRHYNHHTSKISVSSNSDTQIDEVETSLLPRPYAPNSMEALRDARRSSDWKSATAYRDSKLVYNGRVEGFNSGGLRVRFYSIMGFLPFPQLSTVYYCKEPNKPIQDIAKEMIGSILSVTVIKVDEENKKLILSEKEATWSKYSKYVNIGDIFEARIGSVEDYGAFAYLRFPDGLYHLSGLIHISEVAWDLIQDVRDFLREGEEVKVKVIGIDSVKSRLSLSLKQLEEDPLLETLDKVIPQNGLAVSGSFSGNSSRIDPLPGLDTILEELLQEDGILDARISRQGFEKRVVSQDLQLWLSNAPPLDQRFTLLARAGRQVQEILLKTSLDQEGIKRAIQQVLERVP* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2309 393 CDD S1_RPS1_repeat_ec2_hs2 114 184 - -
Psa5g2309 393 SUPERFAMILY Nucleic acid-binding proteins 111 184 IPR012340 -
Psa5g2309 393 ProSiteProfiles S1 domain profile. 198 272 IPR003029 GO:0003676
Psa5g2309 393 Gene3D - 99 190 IPR012340 -
Psa5g2309 393 ProSiteProfiles S1 domain profile. 109 184 IPR003029 GO:0003676
Psa5g2309 393 PANTHER OS03G0844900 PROTEIN 4 393 - -
Psa5g2309 393 SUPERFAMILY Nucleic acid-binding proteins 196 285 IPR012340 -
Psa5g2309 393 Gene3D - 191 274 IPR012340 -
Psa5g2309 393 SMART S1_6 107 184 IPR022967 -
Psa5g2309 393 SMART S1_6 196 272 IPR022967 -
Psa5g2309 393 Pfam S1 RNA binding domain 195 272 IPR003029 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2309 Psa-Chr5 178770798 178782151 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2309 - - gmx:100798303 511.146