Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2262 ATGTCTCAGGTTGATAACAGAAATTCCTCAGCTGCTAAGCGTGCCAGGACTGATGGTAGCCGCAGGGAAGATGATTGGACATGTCCCAGCTGTGGCAATGTCAATTTCTCTTTCAGGACAACCTGCAATATGCGTAACTGCACCCAACCAAGGCCTGCTGATCATAACTCTAAATCTGCTGTGAAGCCTCTTCAAGCTCCACAGGCCTATTCAGCTGCACCTCCTTATATAGGCTCCAATGCCCCCCCTTCAATATATCTTGGTGTCCCACCATACGGGTCTTCTTTATTCAATGGATCACCTGTTCCTCCCTATGAGGTTCCATTTTCTGGAGGATCAGCGGCCTATCACTACAATTATGGAGGCCGCCTTTCTGCTGGCAGTCCGTATAGGCCACTGCATCTAGCAGGACCGGCACCATACGCAAGTGGATCCATGGTGGGAAATGGTGGGATCTATGCCATGCCTCAGTTATTGGATCGTTATGGCCTCGGTGTCCCTATTGGACCTGGAACAATGGGCACTAGGCCAGGATTTTTTCGCGATGACAAGTCTCAGAAAAAGGGAGGAGATGCAACTCGTGACAATGATTGGGCATGCCCAAAATGTGGCAACGTCAATTTCTCATTTAGAACTGTCTGCAACATGAGAAAGTGCAACACTCCCAAGCCTGGAACCCCGGCCTCAAAGTCGGACAAGAACTCTAAGCAAAAGATGCCCGAGGGAAGCTGGAAATGTGAAAAATGTAATAACATAAATTACCCGTTCCGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGAGTCGGATAAATCTCCCTCATCATCTCCAGATCAAAATGACCAGTGA 861 0.4855 MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAVKPLQAPQAYSAAPPYIGSNAPPSIYLGVPPYGSSLFNGSPVPPYEVPFSGGSAAYHYNYGGRLSAGSPYRPLHLAGPAPYASGSMVGNGGIYAMPQLLDRYGLGVPIGPGTMGTRPGFFRDDKSQKKGGDATRDNDWACPKCGNVNFSFRTVCNMRKCNTPKPGTPASKSDKNSKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESDKSPSSSPDQNDQ* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2262 286 MobiDBLite consensus disorder prediction 1 24 - -
Psa5g2262 286 PANTHER OS08G0521400 PROTEIN 5 277 - -
Psa5g2262 286 PANTHER ZINC FINGER PROTEIN 5 277 - -
Psa5g2262 286 MobiDBLite consensus disorder prediction 266 286 - -
Psa5g2262 286 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Psa5g2262 286 SUPERFAMILY Ran binding protein zinc finger-like 187 225 IPR036443 -
Psa5g2262 286 SUPERFAMILY Ran binding protein zinc finger-like 234 271 IPR036443 -
Psa5g2262 286 MobiDBLite consensus disorder prediction 222 243 - -
Psa5g2262 286 Gene3D - 229 272 - -
Psa5g2262 286 Gene3D - 14 54 - -
Psa5g2262 286 Gene3D - 191 227 - -
Psa5g2262 286 Pfam Zn-finger in Ran binding protein and others 240 270 IPR001876 -
Psa5g2262 286 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Psa5g2262 286 Pfam Zn-finger in Ran binding protein and others 195 224 IPR001876 -
Psa5g2262 286 SMART zf_4 242 268 IPR001876 -
Psa5g2262 286 SMART zf_4 196 222 IPR001876 -
Psa5g2262 286 SMART zf_4 24 50 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2262 Psa-Chr5 176319639 176323122 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2262 181 273 EF-hand Containing Proteins AT1G55040 32.258 9.09e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2262 - - gmx:100796535 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2262 5 176319639 176323122 Psa5g2262 5 176319639 176323122 ECH