Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2225 ATGTCGCTCGCATCATTCTCCATCATCCGCCACCACCGCTTGGTGGCTACCGCCACCCCTCAACTTCTCCGGCGCTTCTGTTTCTTCCCGATTTCCGCCAGACGACAAAACCCTAAGCACGAAGCCCCAAACAAGAATCTCCTGAAAGCAAAACACACATTGAAGAATTTCTCATCTCTCGCTCCCATCCTCTCCCGCGAAGACAACCCTCCTCTTTCGGAATCCCAAGCCATCGGCGTCGTCGCTTCTTCCCAAGCCAATTTCATGCGCGTAGTCGTCCAATCAGTCCCCGAAGAATCTTCTGGAAACTTCCACGGTGCTTCCGGAGGAGTGGAACTGCTGTGCGTTGTGAGGGCGCTGCTGAAGAAGATAAAGCGTAGGGTTATGGTTGGAGATAAGGTTATAGTAGGTTCTGTTGATTGGGTGGATCGTAGGGGCATGATTGAAAACGTGTTTCAGCGAAATTCTGAAATGCTTGACCCTCCCGTGGCTAACGTGGACCATTTACTGGTTCTCTTCTCGCTTGATCAACCAAAGCTTGAGACATTTACGCTTACTCGGTTTTTGGTTGAAGCCGAGTCCACTGGGATTCCTCTCACTCTAGCTCTTAACAAGACTGAGCTTGTGGATAAAGAGACCTTGGATTCCTGGAAGGCTAGGTTTCATGACTGGGGCTACCAGCCAGTTTTTTGCAGTGTTAAATCCGGACAAAACCTTGATCTTCTTGCATTCCAATTGAGAGATCAAACAACAGTGGTTGTGGGTCCTAGTGGAGTTGGGAAGTCTAGTTTAATCAACGCTCTTAGAAGCAACCATCGTACTTGTGATACTGCAGATGGGGAGAATTGGTTTGAACCTATTTTAGGTAGCAAGTGGTTAGAGGACCAGCGAGTTGCGGAGGTTTCGACAAGAAGTGGCAGGGGGAAGCATACTACTCGTCACGTGTCTCTGCTTCCATTAACTGGAGGGGGTTATCTTGCTGATACTCCCGGGTTTAACCAGCCTAGTTTATTGAAAGTGACAAAGCAATCTCTTGCTCAAACTTTTCCCGAAATCAGGAAAATGCTTGGTGGAAATGAGCCTGCAAAATGTTCGTTTAACAATTGCTTGCATCTTGGTGAACCTGGCTGTGTTGTGAAGGGGGATTGGGAAAGATATTCATTCTATTTTCAACTTCTTGATGAGATTAGAATCAGAGAGGAGTTCCAGCTGAGGACATTTGGAACAAAAAGAGAAAGTGATGTAAGGTTAAAAATAGGAGATAAGGGTTCTCAGCAAGCAGAGCCTCGCTTGGAACTTAAGAAGCATAGACGACAATCTCGTAAGAAGACTAACCAATCAATTTTAGATGATCTGGATGATGATGACGACGACAATTTGCTTGACGAAGAGAACTATCCCATTGTAAATGCTTTTAGGAATGAAAATCCTTAA 1434 0.4603 MSLASFSIIRHHRLVATATPQLLRRFCFFPISARRQNPKHEAPNKNLLKAKHTLKNFSSLAPILSREDNPPLSESQAIGVVASSQANFMRVVVQSVPEESSGNFHGASGGVELLCVVRALLKKIKRRVMVGDKVIVGSVDWVDRRGMIENVFQRNSEMLDPPVANVDHLLVLFSLDQPKLETFTLTRFLVEAESTGIPLTLALNKTELVDKETLDSWKARFHDWGYQPVFCSVKSGQNLDLLAFQLRDQTTVVVGPSGVGKSSLINALRSNHRTCDTADGENWFEPILGSKWLEDQRVAEVSTRSGRGKHTTRHVSLLPLTGGGYLADTPGFNQPSLLKVTKQSLAQTFPEIRKMLGGNEPAKCSFNNCLHLGEPGCVVKGDWERYSFYFQLLDEIRIREEFQLRTFGTKRESDVRLKIGDKGSQQAEPRLELKKHRRQSRKKTNQSILDDLDDDDDDNLLDEENYPIVNAFRNENP* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2225 477 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 1, MITOCHONDRIAL-RELATED 66 458 - -
Psa5g2225 477 PANTHER SMALL RIBOSOMAL SUBUNIT BIOGENESIS GTPASE RSGA 66 458 IPR004881 GO:0003924|GO:0005525
Psa5g2225 477 TIGRFAM TIGR00157: ribosome small subunit-dependent GTPase A 128 272 IPR004881 GO:0003924|GO:0005525
Psa5g2225 477 Hamap Small ribosomal subunit biogenesis GTPase RsgA [rsgA]. 77 400 IPR004881 GO:0003924|GO:0005525
Psa5g2225 477 Gene3D - 72 151 IPR012340 -
Psa5g2225 477 ProSiteProfiles EngC GTPase domain profile. 164 333 IPR010914 GO:0003924|GO:0005525
Psa5g2225 477 SUPERFAMILY Nucleic acid-binding proteins 77 154 IPR012340 -
Psa5g2225 477 MobiDBLite consensus disorder prediction 417 477 - -
Psa5g2225 477 CDD YjeQ_EngC 164 394 IPR004881 GO:0003924|GO:0005525
Psa5g2225 477 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 155 335 IPR030378 GO:0005525
Psa5g2225 477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 397 IPR027417 -
Psa5g2225 477 Pfam RsgA GTPase 151 337 IPR010914 GO:0003924|GO:0005525
Psa5g2225 477 Gene3D - 152 337 IPR027417 -
Psa5g2225 477 MobiDBLite consensus disorder prediction 417 434 - -
Psa5g2225 477 Gene3D Probable gtpase engc; domain 3 339 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2225 Psa-Chr5 174350085 174353681 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2225 K06949 - gmx:100796145 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2225 5 174350085 174353681 Psa5g2225 5 174350085 174353681 ECH