Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2189 ATGGCAATGATGCCATACTACCTCTCTAGGTTACCTTATCATGATTCCCTTCAAATTCTTGAGGCTGATATTCAACAAGCTAATTCTTTGGCTGCTGAAATTCCAAGAGCAAAAGGAGGAAATCTTATTAAAATGAAATTGGTTTGCAATCAATTGGCTCCTCTTGTTTTGTTGTTTCTTCAATGGATGGATTGGTCTTGTGCTGGCTTTTTGCATAGTTATCTTAACCTCTTCCATATACTTATATACAAAGAACCAAATGATGGTAGATCAATCTTGTCTAGTCGTGGAAGGAAAGCAACCATTAAGGATTTTTATGCGGTTATATTGCCGTCTCTTCAGCGGCTTCACGGTAGTTTCGACGACAAGTTGGAGACTTGTGAAGAAATGAACACGCATTTTGAAGGTTCGGTTTGTGGCAAGAAGGTGATTGAAGGAGATGGGAAACTAACCGATGTTGATTTACAAAGAGAAGATGAATGTGGGATTTGCTTAGAGCCTTGTACTAAAATGGTTTTGCCGAATTGTTGTCACGCCATGTGCATCAAATGCTACCGCAAGTGGAACAGAAAGTCCGAGTCGTGTCCTTTTTGTCGCGGTAGCTTGAGGAGGGTTAATTCGGAGGATCTATGGGTATTAACTTGCGATGAAGATGTTGTCGACGCTGAAACAGTTTCTAAAGAAGACTTATTGCGGTTTTACCTCTACATAAACAAGCTTCCCAAAGATAACCCCGACGCACTTTTCCTAATGTATTACGAATACCTGATTTGA 774 0.4018 MAMMPYYLSRLPYHDSLQILEADIQQANSLAAEIPRAKGGNLIKMKLVCNQLAPLVLLFLQWMDWSCAGFLHSYLNLFHILIYKEPNDGRSILSSRGRKATIKDFYAVILPSLQRLHGSFDDKLETCEEMNTHFEGSVCGKKVIEGDGKLTDVDLQREDECGICLEPCTKMVLPNCCHAMCIKCYRKWNRKSESCPFCRGSLRRVNSEDLWVLTCDEDVVDAETVSKEDLLRFYLYINKLPKDNPDALFLMYYEYLI* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2189 257 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 257 - -
Psa5g2189 257 SUPERFAMILY RING/U-box 152 203 - -
Psa5g2189 257 ProSiteProfiles Zinc finger RING-type profile. 161 199 IPR001841 -
Psa5g2189 257 SMART ring_2 161 198 IPR001841 -
Psa5g2189 257 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Psa5g2189 257 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 210 IPR013083 -
Psa5g2189 257 Pfam Ring finger domain 159 199 IPR001841 -
Psa5g2189 257 PANTHER RING FINGER PROTEIN 41, 151 6 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2189 Psa-Chr5 172899780 172902279 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2189 - - mtr:MTR_3g086130 494.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2189 5 172899780 172902279 Psa5g2189 5 172899780 172902279 ECH