Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2182 ATGGATTGCTGCATAATCAGTAAACTCAAATCCGAACCTCTCTGGTTCCTCCTTCTCTTCTCACTCGGTCTCATCACCATTGTCAGATTCACTCTAACATTCCTCAACTGGGTCTATGTTAATTTTCTCAGACAACCCAAAAACCTCAAAAAGTACGGATCTTGGGCACTGGTTACCGGACCCACAGACGGCATTGGAAAAAGCTTCGCCTTTGAACTCGCTCGTAAAGGCTTGAACCTAATCCTTGTCGGTCGCAACCCCGACAAACTCAAAGACGTTTCAGATTCTGTCATAGCCAAGTTCGGAAAAACCGAGGTTAAAACCGTTGTCGTTGATTTCACCGGTGATCTCGACGAGGGTGTGGATAGAATTCGTGAAGCGATTGAGGGGTTGGATATTGGGGTGTTGGTTAACAACGTGGGGATTTCTTACCCTTATGCGAGATTCTTCCATGAATTGGATGAGGAGCTTCTGAAGAATTTGATTAAGGTGAATGTTGTGGGAACTACCAAGGTTACGCATGCTGTTTTACCTGGGATGTTGAAGAGAAAGAAGGGAGCGATTGTTAACATTGGTTCTGGTGCTGCTATTGTTATTCCTTCTGATCCACTTTATGCGGTTTATGCTGCCACTAAAGCGTACATTGATCAATTCTCTAGATGTCTCTATGTTGAATACAAGAAGAGTGGGATTGATGTGCAGTGTCAGGTTCCTTTATATGTGGCAACAAAGATGGCTTCAATCAAGAGATCTTCATTCTTCGTTCCATCAACAGACGGATACGCGAAAGCAGGTGTGAAATGGATAGGATACGAACCTCGTTGCACACCCTATTGGCCACATACCCTTCTTTGGGCTGTGGCGTGTTCATTGCCGGAGTACGTAGTTGATACTTGGCGCCTCGGGTTTTGTATGGGCATTAGAAAGAGGGGGCAGCTCAAAGACTCGAGGAAGCAGGAATAA 963 0.4517 MDCCIISKLKSEPLWFLLLFSLGLITIVRFTLTFLNWVYVNFLRQPKNLKKYGSWALVTGPTDGIGKSFAFELARKGLNLILVGRNPDKLKDVSDSVIAKFGKTEVKTVVVDFTGDLDEGVDRIREAIEGLDIGVLVNNVGISYPYARFFHELDEELLKNLIKVNVVGTTKVTHAVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIKRSSFFVPSTDGYAKAGVKWIGYEPRCTPYWPHTLLWAVACSLPEYVVDTWRLGFCMGIRKRGQLKDSRKQE* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2182 320 Gene3D - 49 267 - -
Psa5g2182 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Psa5g2182 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Psa5g2182 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Psa5g2182 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Psa5g2182 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
Psa5g2182 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 308 IPR036291 -
Psa5g2182 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Psa5g2182 320 PANTHER RH59310P 4 319 - -
Psa5g2182 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
Psa5g2182 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Psa5g2182 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Psa5g2182 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Psa5g2182 320 PANTHER BETA-KETOACYL REDUCTASE 1-RELATED 4 319 - -
Psa5g2182 320 PIRSF 11-beta-HSD1 5 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2182 Psa-Chr5 172033223 172035928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2182 1 320 Lipid Metabolism Gene Families AT1G67730 64.375 4.55e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2182 K10251 - gmx:100814139 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa7g1382 7 99904779 99905160 Psa5g2182 5 172033223 172035928 PCT