Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2170 ATGACAAGAAAGATGGTGGCGGAGGAAGAGGTATCATATCTTACTTTGAGAACAAAGGGGCCCCATCCTTTTGAGACGACTATTATGGTGTCTCATATAGATGATATGGAGGTTACTCCGGTTGAGACAAAGTTCGGAAGACCATTCATAATCCTCAGAGAGCAAGAAACGAAGAACAGGCTTCGAGGTCTCGATGCTCAGAAAGCTAACATCTCCGCCGGTAAAGCCGTCGCTCGTATCCTCCGAACATCTCTCGGTCCTAAGGGCATGGACAAGATGCTTCAGAGCCCCGATGGCGACGTCATCATCTCAAATGATGGAGCAACGATATTGGAACAGATGGATGTCGACAACCAGATTGCAAAGCTGATGGTGGAGTTGTCGAGGAGTCAAGACTATGAAATCGGTGATGGTACTACTGGAGTTGTTGTGTTGGCTGGATCTCTTCTTGAGCAAGCTGAGAGGCTTTTGGAACGTGGAATTCACCCCATTAGGATTGCTGAGGGATATGAAATGGCTTCCAGGATTGCTGTTGAACATCTGGAACAAATTGCGAATAAGTTTGAGTTTGGAGAAACTATTTTGGAGCCTTTGATTCAGACTTGTATGACTACGTTGTCATCCAAAATTGTGAATCGGTGTAAGCGTAGCTTGGCCGAGATTGCTGTCAAAGCTGTTCTTGCTGTTGCTGATCTAGAGAGAAAAGATGTTAACTTGGATCTAATTAAAGTAGAAGGTAAAGTCGGTGGGAAATTGGAAGATACTGAGTTGGTGTATGGAATCATTGTTGACAAGGATATGAGCCATCCTCAAATGCCAAAGCAGATTGTAGATGCTAACATTGCTATATTGACTTGCCCATTTGAGCCCCCAAAGCCAAAAACCAAGCATAAGGTTGATATTGACACAGTGGAGAAGTTTCAGACGTTAAGGAAGCAGGAGCAGAAATATTTTGATGACATGGTTCAACAATGCAAGGATGTAGGTGCAACCCTTGTTATTTGCCAATGGGGTTTTGATGATGAAGCAAATCATCTCTTGATGCACAGGAACTTGCCAGCTGTTAGGTGGGTTGGTGGTGTTGAGTTGGAATTGATTGCCATAGCAACAGGTGGAAGAATTGTTCCCAGGTTCCAGGAATTAACTGCAGAAAAGTTAGGAAAGGCTGGTATCGTCAGAGAGAAAGCATTTGGAACAACTAAAGACCGGATGCTGTACATTGAGCACTGTGCTAATTCAAGGGCTGTGACAATATTCATTCGTGGAGGTAACAAAATGATCATTGAAGAGACAAAGCGCAGTATTCACGATGCACTATGTGTGGCCAGGAATCTTATTCGCAATAACTCAATTGTGTATGGTGGTGGTTCGGCTGAGATTGCATGCTCTATTGCTGTCGAAGCAGCTGCTGACAAATATCCTGGAGTAGAACAGTATGCCATTAGAGCCTTTGGGGATGCTTTGGAATCTATCCCTATGGCCCTTGCTGAAAATAGTGGTCTCCAACCAATCGAAACATTATCTGCTGTGAAGTCACAACAAATAAAGGATAATTATCCTCACTTTGGCATTGATTGCAATGATGTTGGCACAAACGACATGAGGGAGCAAAATGTCTTTGAAACTTTGATCGGAAAGCAGCAACAGATATTGCTTGCTACTCAAGTTGTCAAGATGATATTGAAAATTGATGATGTTATTTCTCCATCTGAGTACTAG 1719 0.4316 MTRKMVAEEEVSYLTLRTKGPHPFETTIMVSHIDDMEVTPVETKFGRPFIILREQETKNRLRGLDAQKANISAGKAVARILRTSLGPKGMDKMLQSPDGDVIISNDGATILEQMDVDNQIAKLMVELSRSQDYEIGDGTTGVVVLAGSLLEQAERLLERGIHPIRIAEGYEMASRIAVEHLEQIANKFEFGETILEPLIQTCMTTLSSKIVNRCKRSLAEIAVKAVLAVADLERKDVNLDLIKVEGKVGGKLEDTELVYGIIVDKDMSHPQMPKQIVDANIAILTCPFEPPKPKTKHKVDIDTVEKFQTLRKQEQKYFDDMVQQCKDVGATLVICQWGFDDEANHLLMHRNLPAVRWVGGVELELIAIATGGRIVPRFQELTAEKLGKAGIVREKAFGTTKDRMLYIEHCANSRAVTIFIRGGNKMIIEETKRSIHDALCVARNLIRNNSIVYGGGSAEIACSIAVEAAADKYPGVEQYAIRAFGDALESIPMALAENSGLQPIETLSAVKSQQIKDNYPHFGIDCNDVGTNDMREQNVFETLIGKQQQILLATQVVKMILKIDDVISPSEY* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2170 572 Pfam TCP-1/cpn60 chaperonin family 77 568 IPR002423 GO:0005524
Psa5g2170 572 ProSitePatterns Chaperonins TCP-1 signature 2. 103 119 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Psa5g2170 572 SUPERFAMILY GroEL equatorial domain-like 58 568 IPR027413 -
Psa5g2170 572 CDD TCP1_epsilon 45 568 IPR012718 GO:0005524|GO:0006457|GO:0051082
Psa5g2170 572 ProSitePatterns Chaperonins TCP-1 signature 1. 82 94 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Psa5g2170 572 Gene3D - 74 567 IPR027413 -
Psa5g2170 572 PANTHER CHAPERONIN 42 569 IPR017998 GO:0140662
Psa5g2170 572 Gene3D GroEL 259 413 IPR027409 -
Psa5g2170 572 TIGRFAM chap_CCT_epsi: T-complex protein 1, epsilon subunit 44 569 IPR012718 GO:0005524|GO:0006457|GO:0051082
Psa5g2170 572 SUPERFAMILY GroEL apical domain-like 254 422 IPR027409 -
Psa5g2170 572 PANTHER BNAA08G19100D PROTEIN 42 569 - -
Psa5g2170 572 ProSitePatterns Chaperonins TCP-1 signature 3. 131 139 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Psa5g2170 572 SUPERFAMILY GroEL-intermediate domain like 196 449 IPR027410 -
Psa5g2170 572 Gene3D - 187 449 IPR027410 -
Psa5g2170 572 PRINTS Tailless complex polypeptide 1 (chaperone) signature 79 95 IPR017998 GO:0140662
Psa5g2170 572 PRINTS Tailless complex polypeptide 1 (chaperone) signature 101 119 IPR017998 GO:0140662
Psa5g2170 572 PRINTS Tailless complex polypeptide 1 (chaperone) signature 131 150 IPR017998 GO:0140662
Psa5g2170 572 PRINTS Tailless complex polypeptide 1 (chaperone) signature 417 439 IPR017998 GO:0140662
Psa5g2170 572 PRINTS Tailless complex polypeptide 1 (chaperone) signature 451 463 IPR017998 GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2170 Psa-Chr5 169470121 169478091 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2170 215 478 EF-hand Containing Proteins AT3G14270 22.535 1.44e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2170 K09497 - gmx:100817323 986.482