Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2169 ATGAATCCTTTGTGCTGCATTGCTCCGGTTTCGATCGATCGGGACCGGAGTAACCCCGTGGTGACGAAGTCTACTCCTCAGTGTCAGTTAGGGTTAGATTCGTCGATCAAAACGGTGAACTCTGCTTCTAAATCGAGTATTTCAACTCATGATTCGTCGGTTGCTGCGGATTCAGTTAAATCCTCCTCCGCGGGTTTGAATCACGATGATGATGATGTGGTTCATGAGCTTCGGGATTCTAAGGGGTTTGCTGGTGGCAATGGCGGCGGTGTGGCTGGTAGTGTGGCGGGGATATTGTATAAGTGGGTGAATTATGGGAAAGGTTGGAGGTCTAGGTGGTTCGTGTTGGAAGATGGCGTGCTTTCTTATTATAAGATTCATGGACCGGATAAGATCTTGATGAGTCCTGCTAAAGATAGGAGTGTTAGGGTGATCGGAGAGGAGTCGGCGAAGTATGTGAAAAAGGCGAATTGGAATCTGAATCGAGCTAATGGAGTAGCAGTAGGAGGAGCTACTAAGCAATGCAAGCCCTTCGGTGAGATTCATTTGAAGGTTTCTTCAGTTCGCTTCAGCAAGTCTGATGAAAAGAGGCTTTCTTTATTTACCGGGACAAAAACTCTCCACTTGAGGTGTGTATCTAGAGAAGACAGAGCCATGTGGATTGAAGCCTTGCAATCTGCAAAAGATCTTTTTCCTAGAGCTCTGACAAGCAGTGATCTTGCTACTCCAGAAGATATCGTAGTTTCGACAGAGAAACTGCGATCAAAGTTATCACAGGAAGGCATTAGCGAAGAAATCATCAATGACTGTGAGTCCATTATGCTCTCTGAAGTCTCATATCTACAAGGCAAGTTGAAGTTTCTTCAGCAGAAACATGTTATGTTGTTGGACACCTTAAAACAGTTGGAGACAGAGAAAATAGAGCTGGAAACTACTGTAGTAGATGAAACAAAGGAACGTGAGTCATATTGCGGACAAGGGAATAGAAGGTTTAGTGATTTCTATTCTGTTATGTCGGAAGGCAGTGCTACAGATTCAGTAGCTGATAATGAAAGTCAAGAGGGAGCAGATGCTGAAACAGACGATGACGATGGAGCATATTTTGATACAAATGAGATTTTATATTCAGATGCCTTAAGAAGTGCTTCCTATCGAAGTAGAGAAGGTACGGGAAATGCCAGTATATATGATAGAGATTATATCCTCCATGATGGTTTGCATGGGTTTGAGAAGGCGATCAAAGATATAAGCTATCCTTATGTCAAAAGAAGGGATAATTTGCCTGAACCAAAAGAGAAAGAGAAACCTGTTGGCCTGTGGTCAATTATTAAAGACAATATTGGGAAGGATCTTTCTGGAGTTTGTCTCCCTGTTTATTTTAATGAACCACTCTCTTCATTGCAAAAATGTTTTGAAGACCTGGAGTACTCAAACCTAGTTGATAGAGCATGTGAGTGGGGAAAGCAGGGAAATGAATTGATGAGAATTCTAAATATTGCAGCATTTGCTGTGTCTGGCTATGCGTCCACCGAAGGTCGACAGTGTAAACCCTTCAATCCGCTACTTGGGGAGACTTACGAAGCTGACTATCCTGATAAAGGAGTTAAATTTTTTTCTGAGAAGGTTAGTCATCATCCGATGATTGTTGCTTGTCACTGTGAGGGAAGAGGGTGGAAGTTCTGGGCAGACTCCAATTTGAAAGGAAAGTTCTGGGGGCGTTCTATTCAGTTAGATCCTGTGGGTGTTCTCACCCTTCAGTTTGAGGACGGTGAAACATTTCAGTGGAGCAAGGTCACCACTTCCATATACAATATTATACTAGGTAAAATTTATTGTGACCACTATGGTACTATGCACATCAAGGGCAGCGGAAACTACTCTTGCAAACTGAAGTTCAAAGAGCAATCAATCATTGACCGAAATCCACATCAGGTCCATGGGTTTGTTCAAGACAACAGAACTGGAGAGAAGGTAGCAATGTTAATTGGAAAGTGGGACGAAGCGATGTACTATGTACTTGGGGATCCAACTACAAAGCCCAAAGGTTATGATCCAATGACAGAAGCTGCTTTATTGTGGGAAAGAGACAACTATGTGCCCAAGACGAGATATAACCTCTCTCCCTTTGCAATTTCCTTGAATGAAATAATGCCCGGTTTATTGGAGCGTTTGCCTCCAACTGACTCAAGGTTGAGACCAGATCAGAGACATCTAGAAAATGGAGACTATGAATTTGCTAATGCAGAGAAACTAAGGCTTGAACAGTTGCAGAGACAGGCAAGAAAGATGCAAGAAAGAGGATGGCAGCCCAGATGGTTTAGGAAGGATGAGGATGGTTCTTACCGATACATGGGTGGTTATTGGGAGGCAAGAGAAAAGAACAATTGGGATGAAATCCCTAATATATTTGGACAAGGTTGTGATTTGCCTTCATGTTCTGAAGAGACTGTATCCTACTGA 2460 0.428 MNPLCCIAPVSIDRDRSNPVVTKSTPQCQLGLDSSIKTVNSASKSSISTHDSSVAADSVKSSSAGLNHDDDDVVHELRDSKGFAGGNGGGVAGSVAGILYKWVNYGKGWRSRWFVLEDGVLSYYKIHGPDKILMSPAKDRSVRVIGEESAKYVKKANWNLNRANGVAVGGATKQCKPFGEIHLKVSSVRFSKSDEKRLSLFTGTKTLHLRCVSREDRAMWIEALQSAKDLFPRALTSSDLATPEDIVVSTEKLRSKLSQEGISEEIINDCESIMLSEVSYLQGKLKFLQQKHVMLLDTLKQLETEKIELETTVVDETKERESYCGQGNRRFSDFYSVMSEGSATDSVADNESQEGADAETDDDDGAYFDTNEILYSDALRSASYRSREGTGNASIYDRDYILHDGLHGFEKAIKDISYPYVKRRDNLPEPKEKEKPVGLWSIIKDNIGKDLSGVCLPVYFNEPLSSLQKCFEDLEYSNLVDRACEWGKQGNELMRILNIAAFAVSGYASTEGRQCKPFNPLLGETYEADYPDKGVKFFSEKVSHHPMIVACHCEGRGWKFWADSNLKGKFWGRSIQLDPVGVLTLQFEDGETFQWSKVTTSIYNIILGKIYCDHYGTMHIKGSGNYSCKLKFKEQSIIDRNPHQVHGFVQDNRTGEKVAMLIGKWDEAMYYVLGDPTTKPKGYDPMTEAALLWERDNYVPKTRYNLSPFAISLNEIMPGLLERLPPTDSRLRPDQRHLENGDYEFANAEKLRLEQLQRQARKMQERGWQPRWFRKDEDGSYRYMGGYWEAREKNNWDEIPNIFGQGCDLPSCSEETVSY* 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2169 819 Coils Coil 285 319 - -
Psa5g2169 819 Gene3D - 92 231 IPR011993 -
Psa5g2169 819 Gene3D - 735 802 - -
Psa5g2169 819 Gene3D - 524 690 - -
Psa5g2169 819 Pfam Oxysterol-binding protein 439 792 IPR000648 GO:0008289
Psa5g2169 819 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED PROTEIN 1D 2 808 - -
Psa5g2169 819 ProSiteProfiles PH domain profile. 92 229 IPR001849 -
Psa5g2169 819 MobiDBLite consensus disorder prediction 342 363 - -
Psa5g2169 819 SUPERFAMILY PH domain-like 96 233 - -
Psa5g2169 819 SUPERFAMILY Oxysterol-binding protein-like 433 804 IPR037239 -
Psa5g2169 819 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 2 808 IPR000648 GO:0008289
Psa5g2169 819 Pfam Pleckstrin homology domain 97 226 - -
Psa5g2169 819 Coils Coil 746 766 - -
Psa5g2169 819 SMART PH_update 93 231 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2169 Psa-Chr5 169426601 169435608 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2169 K20456 - gmx:100817856 1486.47