Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2124 ATGACATCTTCGCTTATTGAAGGCGGACACGATGAGGCTAAGCACGAGCCGTCCGATTTGATCGCAGAGAAAATGAATCCTACGGTTGTAAACCTTTTGCTTCCGAATGAAACGTTCTTGAAAGCTGCAATTTCTCTGAAAGACGAGGTGGTGGAGGTGAATTGGAATCGGCGAGAAGTGGTTGATCCGACGGTGTATACGGGTTTGCTTGGTACGGCTTTCACTTGCCTGAGATCGTTTGAGGTTACCGGTTGCCGTGAAGATTTGTTGTTATGCTCGGAGATAATCGACACGTGTGTTACTGTCGCACGTGCCTCCTTCAGACACGTGACATTTTTGTGTGGTAGAGGAGGCGTATATGCCCTTGGAGCTGTTGTTGCTAATTACATGGGGGACCTTCCAAAACGTGACATGTTTTTGGGTCTATTCATCGAGGTGGCAAAAGAAAGAGCTCTGCCTATTGGACCAGAGGAAGGTGGATTGGGAATGTCATATGATCTTCTATACGGACGAGCTGGATTTTTATGGGCCGCATTATTCCTAAACAAGCACCTAGGAGAAGACGTAGTGCCCAAAGACATTCTAATGCCTATTATTGATGCAGTATTGACCGGCGGTAGAGCCGGGGCGTCTGATATTAAAGACTGTCCATTAATGTATAGATGGCATGGGACTAGATACTTAGGTGCAGCAAATGGTCTTGCTGGTATTCTTCATGTGCTCCTTCATTTTCCACTTCCAAGTGAAGATGCTGAAGATGTAAAGGGAACTTTGAGATATCTGATAAGTAAACGTTTTCCTCATAGTGGAAATTATCCATGCAGTGAAGGGAATCCAAGAGATAAGTTAGTGCAGTGGAGTCATGGTGCAACTGGGATGGCCATTACACTGTCTAAAGCAGCACAGGTTTTTCCAAATGACAGAGAACTACGAGATGCAGCAATAGAAGCAGGAGAAGTTGTGTGGAAAAGTGGATTAGTGAAGAAAGTGGGACTAGCTGACGGTGTATCTGGAAATGCCTACGCATTTCTTTCACTCTACAAACTAACTAAAGATAGTATATATGAAGAGAGGGCAAAATCATTCTCTTGTTTTTTGTATGAAAATGCTAGAGCTTTGGCAGCTGAGGGGCAAGCTCTTACTGGTGGCAATGACTACTCTCTCTTCCATGGACTTGCTGGGACAGCATGTCTTTGGTTTGATTTGATTGCACCTGATAACTCTAGGTTTCCGGGATATGAATTATAG 1248 0.4439 MTSSLIEGGHDEAKHEPSDLIAEKMNPTVVNLLLPNETFLKAAISLKDEVVEVNWNRREVVDPTVYTGLLGTAFTCLRSFEVTGCREDLLLCSEIIDTCVTVARASFRHVTFLCGRGGVYALGAVVANYMGDLPKRDMFLGLFIEVAKERALPIGPEEGGLGMSYDLLYGRAGFLWAALFLNKHLGEDVVPKDILMPIIDAVLTGGRAGASDIKDCPLMYRWHGTRYLGAANGLAGILHVLLHFPLPSEDAEDVKGTLRYLISKRFPHSGNYPCSEGNPRDKLVQWSHGATGMAITLSKAAQVFPNDRELRDAAIEAGEVVWKSGLVKKVGLADGVSGNAYAFLSLYKLTKDSIYEERAKSFSCFLYENARALAAEGQALTGGNDYSLFHGLAGTACLWFDLIAPDNSRFPGYEL* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2124 415 Gene3D - 21 415 IPR012341 GO:0005975
Psa5g2124 415 PRINTS LanC-like protein superfamily signature 62 80 IPR007822 -
Psa5g2124 415 PRINTS LanC-like protein superfamily signature 165 180 IPR007822 -
Psa5g2124 415 PRINTS LanC-like protein superfamily signature 227 243 IPR007822 -
Psa5g2124 415 PRINTS LanC-like protein superfamily signature 283 303 IPR007822 -
Psa5g2124 415 PRINTS LanC-like protein superfamily signature 330 343 IPR007822 -
Psa5g2124 415 PRINTS LanC-like protein superfamily signature 385 402 IPR007822 -
Psa5g2124 415 PANTHER LANC-LIKE PROTEIN 17 415 - -
Psa5g2124 415 CDD euk_LANCL 65 411 - -
Psa5g2124 415 PANTHER LANC-LIKE PROTEIN GCL1 17 415 - -
Psa5g2124 415 Pfam Lanthionine synthetase C-like protein 60 415 IPR007822 -
Psa5g2124 415 SMART LANC_like_2 59 415 IPR007822 -
Psa5g2124 415 PRINTS Eukaryotic LanC-like protein family signature 195 210 IPR020464 -
Psa5g2124 415 PRINTS Eukaryotic LanC-like protein family signature 263 278 IPR020464 -
Psa5g2124 415 PRINTS Eukaryotic LanC-like protein family signature 301 322 IPR020464 -
Psa5g2124 415 PRINTS Eukaryotic LanC-like protein family signature 401 415 IPR020464 -
Psa5g2124 415 SUPERFAMILY LanC-like 41 415 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2124 Psa-Chr5 165590518 165592986 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2124 - - gmx:100785406 719.153