Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2122 ATGGCGAGTGCAACAGGTTACGGTGACGCAAACCAGAAGATAGACTACGTCTTCAAGGTGGTTCTTATCGGTGATTCCGCCGTCGGAAAATCTCAAATACTAGCTCGTTTTGCCAGAAATGATTTCAGCTTGGACTCTAAAGCTACAATCGGTGTTGAATTTCAAACTCGCACTTTGGTTATTCAACATAAGAGTGTTAAGGCTCAGATCTGGGATACTGCTGGTCAAGAAAGATATAGAGCAGTTACAAGTGCATACTACCGGGGTGCTGTTGGGGCAATGTTGGTTTATGACATTACCAAACGTCCGAGCTTTGATCACATACCTAGATGGTTAGAAGAACTGCGTAACCATGCTGATAAGAATATAGTCATCATTCTTATAGGAAACAAAAGTGATCTTGAGGACCAGCGTGCAGTACCGACAGAGGATGCAAAAGAGTTTGCTGAGAAAGAAGGTTTGTTTTTCTTAGAGACCTCTGCACTGGAAGCAATTAATGTTGAGACAGCCTTTATGACTGTTTTGACAGAAATATTTAACATTGTCAATAAGAAGAACCTGGCTGCTGATGAGAATCAGGGAAATGGCAACTCGGCATCTCTGTCTGGCAAGAAGATTATTATTCCTGGTCCTGCACAAGTCATCCCCGCCAAGAGTAGCATGTGTTGTCAGTAA 675 0.4267 MASATGYGDANQKIDYVFKVVLIGDSAVGKSQILARFARNDFSLDSKATIGVEFQTRTLVIQHKSVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRPSFDHIPRWLEELRNHADKNIVIILIGNKSDLEDQRAVPTEDAKEFAEKEGLFFLETSALEAINVETAFMTVLTEIFNIVNKKNLAADENQGNGNSASLSGKKIIIPGPAQVIPAKSSMCCQ* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2122 224 ProSiteProfiles small GTPase Rab1 family profile. 13 223 - -
Psa5g2122 224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 186 IPR027417 -
Psa5g2122 224 Gene3D - 10 206 IPR027417 -
Psa5g2122 224 ProSiteProfiles small GTPase Ras family profile. 10 208 IPR001806 GO:0003924|GO:0005525
Psa5g2122 224 PRINTS Transforming protein P21 ras signature 18 39 - -
Psa5g2122 224 PRINTS Transforming protein P21 ras signature 41 57 - -
Psa5g2122 224 PRINTS Transforming protein P21 ras signature 59 81 - -
Psa5g2122 224 PRINTS Transforming protein P21 ras signature 121 134 - -
Psa5g2122 224 PRINTS Transforming protein P21 ras signature 156 178 - -
Psa5g2122 224 TIGRFAM small_GTP: small GTP-binding protein domain 17 174 IPR005225 GO:0005525
Psa5g2122 224 ProSiteProfiles small GTPase Rho family profile. 11 182 - -
Psa5g2122 224 SMART ras_sub_4 15 181 - -
Psa5g2122 224 Pfam Ras family 19 178 IPR001806 GO:0003924|GO:0005525
Psa5g2122 224 SMART rho_sub_3 20 177 IPR001806 GO:0003924|GO:0005525
Psa5g2122 224 SMART rab_sub_5 18 181 - -
Psa5g2122 224 CDD Rab11_like 15 179 - -
Psa5g2122 224 PANTHER - 1 223 - -
Psa5g2122 224 SMART ran_sub_2 23 221 - -
Psa5g2122 224 PANTHER RAB GTPASE-LIKE PROTEIN A1D 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2122 Psa-Chr5 165311053 165314574 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2122 K07904 - jre:109014562 412.149