Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2113 ATGGGTGGTTCTGGTTCCAAACTTGAGAAGGCTCTCGGTGACAATTTTCCTGAAGGAGAACATTACTTTGGCCTTGAGAATTTCGGCAATACTTGTTATTGCAACAGCGTTTTGCAGGCTCTATACTTCTGTGTTCCATTTCGAGAACAATTGCTACAATATTATGGAAAAACCAAGAATATAACAGATGCAGAGGAAAATCTTTTGACTTGCTTAGCTGACTTATTTTTGCAGATAAGTTCCCAGAAGAGGAAAACAGGCGTAATTGCTCCTAAACGATTTGTACAGAGGTTGAAAAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGGACGCCCACGAATTCTTAAACTATTTGTTAAATGAACTTGTTGACATTCTGGAAAAAGAGGCCCAGACTGCAAAAGACAATCAAGAGACATTACTACCTTCTGAGAAGATTTCGAATGGACCAAAGAACGGTTTAGCTAATGGTGCTAAAAAAGAGCCGCCTTTAGCTACTTGGGTGCACAAAAATTTCCAGGGAATACTTACCAATGAGACAAGATGCTTGCAATGTGAAACAGTAACGGCTAGGGATGAAACATTTTTCGACTTGAGTCTTGATATTGAACAAAACAGTTCCATTACAAGTTGTTTGAAAAATTTCAGTTCAACCGAGACATTGAATGCTGAAGACAAATTCTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAGATAAAGAGACCGCCTCGTGTTTTAGTCATTCATCTTAAGCGGTTTAAGTACATGGAGCAGCTGGGCCGCTACAAGAAACTGTCTTACCGTGTGGTGTTTCCCCTTGAGCTCAGGTTGAGTGATACAGATGAAGAAGCAGATATTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCCAACCACGGGCATTATGTTTGCCTTGTAAAAAACCATAACCACTGGTTATGTTTTGACGATGAAACTGTTGAGGCGGTTGATGAAGCTTCTGTTCAGACATTCTTTGGGTCAACACAAGAATTCAACAATAATACAGATCATGGTTATATTTTGTTCTATGAGAGCGTTAACAGAAACTAG 1104 0.3995 MGGSGSKLEKALGDNFPEGEHYFGLENFGNTCYCNSVLQALYFCVPFREQLLQYYGKTKNITDAEENLLTCLADLFLQISSQKRKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNYLLNELVDILEKEAQTAKDNQETLLPSEKISNGPKNGLANGAKKEPPLATWVHKNFQGILTNETRCLQCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKRPPRVLVIHLKRFKYMEQLGRYKKLSYRVVFPLELRLSDTDEEADIEYSLFAVVVHVGSGPNHGHYVCLVKNHNHWLCFDDETVEAVDEASVQTFFGSTQEFNNNTDHGYILFYESVNRN* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2113 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 24 39 IPR018200 GO:0004843|GO:0006511
Psa5g2113 367 Gene3D Cysteine proteinases 6 363 - -
Psa5g2113 367 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 295 313 IPR018200 GO:0004843|GO:0006511
Psa5g2113 367 Pfam Ubiquitin carboxyl-terminal hydrolase 23 361 IPR001394 GO:0004843|GO:0016579
Psa5g2113 367 CDD Peptidase_C19G 24 362 - -
Psa5g2113 367 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 23 364 IPR028889 -
Psa5g2113 367 PANTHER UBIQUITINYL HYDROLASE 1-RELATED 1 364 - -
Psa5g2113 367 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 1 364 - -
Psa5g2113 367 SUPERFAMILY Cysteine proteinases 21 364 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2113 Psa-Chr5 164599324 164606467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2113 24 335 Miscellaneous Gene Families AT4G31670 28.173 9.32e-32 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2113 K11842 - gmx:100305765 667.151