Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2106 ATGAAAAAGAAACAATCTTTGCGAAACAAAGCCACCCACTTTGTATCTCTCCTTCTCAACCCCATCTCTGATCCTGATTCTCACCAACATCCTCCATCTTCTTCTTCTGAAGAAATAGGTGAGCTTAAAATAAGTGATGAAGAGGGTAATAATAACAATCATGATTTAGTTGATGGACCTGATACTTCGTCCTTCACTGCCTTTCTCTATTCTTTTATGTCTTCTTCAAACTCTAAAGAGAATGCTAACTCAAATGGACTGAAAAATGATGATAAAGGTAAGAATAGCCCTTTAACTGATTCATCTCTGAAGGATAATGGTGGGAGGAAAAGTTTGTTTTCTAGAAGTAAGCAATCAGTTGGTAGTGCTATTCGCCGAGCTGCCAGAATCGGTGGATTTCGCAATCACAATCGAAAGGATAATAATGATAATGATCTTGAAGTGAAACATCAAGATATGAGGAAAGAATCATTGCCTGTGTCTTTGGATGATTTGCCACGAATTTCTGAACCTTCAGTTCTTGTTTCCGAAAGTATGAGGAATGTTCTCTATGCTTCTCTTCCACCTCTTATGCATGGAAGGAAATGGTTGTTGCTATACAGCACTTGGAGGAATGGTATATCACTTTCGACTCTTTACCGTAGAAGCGCGATATGGCCTGGATTGAGTTTGTTGGTTGTTGGAGATAAAAAAGGAGCAGTATTTGGAAGCTTGGTTGAAACACCTCTCAGACCATCCAACAAGAGGAAATACCAGGGAACAAACAGTACTTTTGTTTTCACAAATATCTCAGGTTATCCTATCATATATAGTCCAACAGGCGTTAACCGTTATTTCACACTTTGCAACACTGACTACCTAGCTATTGGCGGAGGAGGTCATTTTGCTCTTTATCTAGACAGTGATCTATTGAATGGCTCAAGTTCGGTATCTGAAACTTTCGGGAATCCTTGCCTTGCAAATTCTCAGGACTTTGAAGTCAAGGAAGTAGAGTTATGGGGCTTTGTACAGACTTCAAGATATGAAGAAGTGCTTGCATTAAGCAGAACTGAGGCACCAGGGATCTGTCGGTGGTGA 1077 0.3993 MKKKQSLRNKATHFVSLLLNPISDPDSHQHPPSSSSEEIGELKISDEEGNNNNHDLVDGPDTSSFTAFLYSFMSSSNSKENANSNGLKNDDKGKNSPLTDSSLKDNGGRKSLFSRSKQSVGSAIRRAARIGGFRNHNRKDNNDNDLEVKHQDMRKESLPVSLDDLPRISEPSVLVSESMRNVLYASLPPLMHGRKWLLLYSTWRNGISLSTLYRRSAIWPGLSLLVVGDKKGAVFGSLVETPLRPSNKRKYQGTNSTFVFTNISGYPIIYSPTGVNRYFTLCNTDYLAIGGGGHFALYLDSDLLNGSSSVSETFGNPCLANSQDFEVKEVELWGFVQTSRYEEVLALSRTEAPGICRW* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2106 358 ProSiteProfiles TLDc domain profile. 173 336 IPR006571 -
Psa5g2106 358 PANTHER TLD-DOMAIN NUCLEOLAR PROTEIN 1 351 - -
Psa5g2106 358 MobiDBLite consensus disorder prediction 18 40 - -
Psa5g2106 358 MobiDBLite consensus disorder prediction 22 39 - -
Psa5g2106 358 PANTHER NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED 1 351 - -
Psa5g2106 358 MobiDBLite consensus disorder prediction 80 120 - -
Psa5g2106 358 MobiDBLite consensus disorder prediction 99 120 - -
Psa5g2106 358 Pfam TLD 198 335 IPR006571 -
Psa5g2106 358 SMART 109ultra 172 336 IPR006571 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2106 Psa-Chr5 164309849 164311880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2106 195 344 EF-hand Containing Proteins AT5G06260 28.750 2.23e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2106 - - aip:107622578 474.167