Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2072 ATGTCGTCAAATTCAAAGTACCCAATTCTGGATGATAAGCCCATTAATCAGTTGAAGGTTACAGAGCTGAGAGAGGAGCTGAAGAAAAGGAAGTTAGCAACCAAAGGTTTAAAGGAGGATTTAATCAATCGTTTGGATGAAGCTATTCGTGAGGAAAGGGAGGGTGCTGAGGTTTCCCCGGAACAGGAGGAGGATGCTGAGGCTTCCCCCGAACAGGAGGAGGCGGCGGCTGAGGCTTCCCCGAAACAAGAAGAGTCTGCTGTTGAGGCTTCCCCTGAACAGGAGGAGGCTGCGGTTGAGGCTTCTCCCGAACAGGAGGAGGCTGCGGTTGAGGCTTCCCCTGAAAAGGAGGCTGTGGTTGAGGCTTCCCCTGAAAAGGAGGCTGCGGTTGAGGCTTCCCCCAAACCGGAGGCTGCAGAGGGTTTGGAGAAGGACGAGGCTAATGGCTTACATACTAAAGAAGATGAGGTAAAAGATTCCCAGACTGATAATATGGATGCTGAAAAGGGGAATTATGGTGTAGAACCATTTGAAACGGAAAATGTAGTGAAGGTTCCAGAGGCTGTTGATAATGACAGTATTAAGAGTGTTGAGCAGGATGGTGTTACTGACCCAGTTAACGATAATAATACTGTGTCGGCCATGGACGTAGAAGGTGAACATGCAGTTTTGCCAGTTGGTGTAGAATCTGATAACGCGGGAGAGGAGGTAGTTGCCCATCCTTCCACTGTGGAGACCACTGTGGAGACTACTGTGGAGACCACTGTTACGGTCACTGAGACTGTAGAAACTGAAGTAGTAGTCACCGGTCAGGATTCGGATGGTTCAGAGAAGAATAATGAGGATTCAGCAGCCAAGCTAGAGAATGAGGAATCAAGGGCGCAGCTGGATAGTGAGGAATCAAAGCTCCGACTGGAGTGTGACCTGAAGCCTACATGCGACGTTCTCATGCCCATCTCTTCTGCTCCAGAAAACCAGGTATCTGAGGTCAACCCTAGTTTAGGGTCTCAAGTAAAATCTGATTCTTTTTCTACTGATTCTGTGTCAATTAATGAAAAGAATGAACTAAAGGATACTATAATTGCTAATAATGTCAAATTAGAACAAGATAATGTTAGGCCAGAGATGGTGGAAGAACCATCATCCAGAAATGACGTACCTGTTTATGATGAATCGCATTCAATGGATGTTGGAGGGATGCATGAAAAAAAGTCACATGTTGAAGAAAATAACAACAATGTTACAAGTCCAGAGTTGAACAAAACCAATAGTAGTGATGATGTAGGGTATCCAGAAAAGTTGAACTTGGACAGAAGTTCTGGGGATGATTCCATGGAAGAGGACTTGCCTGAGACTAGGCAATATGATTCTAAGTTTAATGTTGATGAACTTAGGGACAAAGTCGAGAATAATGAAGTTCCTATGGTCAATGAAGAAAGCAAACCAATGGTTGAGGGAGATGGTGTATCCGCAAGAAAAAGCGATACCCATCAAGATATTGACATTAGTCCTGTTTCCTTGACTGAGAAGCGAAAATATCCTGAGCAAACATTAGTTGGAAACAACGAGCCTGCAAAAAGGCAACGAAGGTGGAACACTGATACAATTAAAGGATCAGAACTGCAAAGCACTACTCCCAGACCCGCCATTACACCCAAGGAAGGACAAATTACTCTGAAGCGCAGCTTTTCTAGGTCTAATTCATCAGCAACTGATGATACACCTAAAGAACGCATTGTTCCACCATCACGAAGGACCCCGACTAATTCCCTCAGGATTGATCAATTCCTTCGTCCATTTACCCTAAAAGCAGTGCAAGAACTTCTTGGCAAAACTGGGAGTGTCAGCAGTTTCTGGATGGACCAAATAAAGACCCATTGCTATGTTACTTACTCGTCCACTGAAGAGGCCGTTGAGACACGAAATGCTGTGTATAACTTGCAATGGCCTCCAAATGGTGGGCGGCTCTTGGTTGCAGAGTATGTTGATCCTGAAGAAGTGAAAATGAAGCTAGAAGCTCCTCCTACTCCAACTGCCTCTGTAAACAGTGTTCCAACACTTCCTCCCGCTCCACCTTTATCACAGCCGGAGCCTTCCCCGCGTCAGCACAGGGAACAGCATCTTCCAGTTGCTCTCCCACCTCCACCACCATTGTCAAGGCCCCCACCAGTTGTAAGGGAACGTCTTCCATCGCCACCTCCCCTTCCTGAGAAAGTGGAACCACCTATTGTTACTCTGGATGACCTCTTCCGCAAAACCACAGCAACTCCTCGTATCTATTATTTACCTTTGTCTGAAGAGCAAGTTGCTGCAAAACTTGCGGCACAGGGTAAAAGTGCGAGGCATTAA 2349 0.4602 MSSNSKYPILDDKPINQLKVTELREELKKRKLATKGLKEDLINRLDEAIREEREGAEVSPEQEEDAEASPEQEEAAAEASPKQEESAVEASPEQEEAAVEASPEQEEAAVEASPEKEAVVEASPEKEAAVEASPKPEAAEGLEKDEANGLHTKEDEVKDSQTDNMDAEKGNYGVEPFETENVVKVPEAVDNDSIKSVEQDGVTDPVNDNNTVSAMDVEGEHAVLPVGVESDNAGEEVVAHPSTVETTVETTVETTVTVTETVETEVVVTGQDSDGSEKNNEDSAAKLENEESRAQLDSEESKLRLECDLKPTCDVLMPISSAPENQVSEVNPSLGSQVKSDSFSTDSVSINEKNELKDTIIANNVKLEQDNVRPEMVEEPSSRNDVPVYDESHSMDVGGMHEKKSHVEENNNNVTSPELNKTNSSDDVGYPEKLNLDRSSGDDSMEEDLPETRQYDSKFNVDELRDKVENNEVPMVNEESKPMVEGDGVSARKSDTHQDIDISPVSLTEKRKYPEQTLVGNNEPAKRQRRWNTDTIKGSELQSTTPRPAITPKEGQITLKRSFSRSNSSATDDTPKERIVPPSRRTPTNSLRIDQFLRPFTLKAVQELLGKTGSVSSFWMDQIKTHCYVTYSSTEEAVETRNAVYNLQWPPNGGRLLVAEYVDPEEVKMKLEAPPTPTASVNSVPTLPPAPPLSQPEPSPRQHREQHLPVALPPPPPLSRPPPVVRERLPSPPPLPEKVEPPIVTLDDLFRKTTATPRIYYLPLSEEQVAAKLAAQGKSARH* 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2072 782 MobiDBLite consensus disorder prediction 431 455 - -
Psa5g2072 782 MobiDBLite consensus disorder prediction 672 740 - -
Psa5g2072 782 MobiDBLite consensus disorder prediction 266 300 - -
Psa5g2072 782 MobiDBLite consensus disorder prediction 681 698 - -
Psa5g2072 782 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 4 779 - -
Psa5g2072 782 MobiDBLite consensus disorder prediction 109 165 - -
Psa5g2072 782 Pfam RNSP1-SAP18 binding (RSB) motif 737 778 IPR032552 -
Psa5g2072 782 MobiDBLite consensus disorder prediction 410 429 - -
Psa5g2072 782 CDD RRM_ACINU 588 672 IPR034257 -
Psa5g2072 782 ProSiteProfiles SAP motif profile. 15 49 IPR003034 -
Psa5g2072 782 MobiDBLite consensus disorder prediction 51 181 - -
Psa5g2072 782 MobiDBLite consensus disorder prediction 542 574 - -
Psa5g2072 782 SMART sap_9 15 49 IPR003034 -
Psa5g2072 782 Pfam SAP domain 15 49 IPR003034 -
Psa5g2072 782 MobiDBLite consensus disorder prediction 403 455 - -
Psa5g2072 782 MobiDBLite consensus disorder prediction 542 584 - -
Psa5g2072 782 MobiDBLite consensus disorder prediction 709 740 - -
Psa5g2072 782 SUPERFAMILY SAP domain 15 52 IPR036361 -
Psa5g2072 782 MobiDBLite consensus disorder prediction 320 348 - -
Psa5g2072 782 Gene3D SAP domain 2 62 IPR036361 -
Psa5g2072 782 MobiDBLite consensus disorder prediction 275 300 - -
Psa5g2072 782 SUPERFAMILY RNA-binding domain, RBD 582 670 IPR035979 GO:0003676
Psa5g2072 782 PANTHER SAP DNA-BINDING DOMAIN-CONTAINING PROTEIN 4 779 - -
Psa5g2072 782 MobiDBLite consensus disorder prediction 58 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2072 Psa-Chr5 159781373 159785739 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2072 K12875 - gmx:100786288 834.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2072 5 159781373 159785739 Psa5g2072 5 159781373 159785739 ECH