Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2069 ATGGATACCAACGCCGATGATTCAAAACTGGTGGTCCTCATCACGGGTTGTTCCGGTGGAGGAATAGGTCATGCGCTTGCACGCTGCTTTGCCGCCAACAACTGTATAGTGGTGGCCACCAGCAGGTCGCGTTCCACCATGGTGGACTTGGAGGACGACCCCAATTTCTTTCTGCAAGAACTCGATATTCAGTCTGATGAGAGCGTGAAAAGAGTTGTCGATAATGTTATCAATAAATACGGCTGCATTGATATTCTTGTCAATAACGCCGGTGTTCCGAGTGCGGGTCCAGTCGTAGATCTTCCTCTATCTGCGATCAAAAACACCTTCGAAACCAATGTTTTTGGTTCTTTGAGAATGGTACAGGCGGTGGCTCCACACATGGCAGCTAGGAGACAGGGAAAGATTGTGAATATTGGCAGTCTGGTAGGGCTGGCCGCTAGACCTTGGGCGGGCTCCTATGCTGCTTCTAAAGCTGCTCTTCATGCTTTGACAGATGCATTAAGATTGGAGCTTGGGCATTTTGGAATTGATGTTGTGAATGTTGTCTGTGGCAATGTGAAATCAAATATTGTAAAATCTGTCCTATCCACCCACGATAGCATGCCAGAGTGGAAACTGTTCAAGCCATTTGAAGCAGGATTCAGAGAGAGACTTGTTCGTTCTCAGAGCTCAAAATCAACCCCAACTGATGAGTTTGCCAAACACACTGTAGCTGCTGTCCTTAAGAAGAAGACACCTGCATGGTTCTCCTATGGTCAATATACTACTGTGATGGCTATCATGTACCATTTACCTCTTTGTGTTAGAGACTTTCTTTTTAAGAAAGACATGAAACTCTGA 843 0.4591 MDTNADDSKLVVLITGCSGGGIGHALARCFAANNCIVVATSRSRSTMVDLEDDPNFFLQELDIQSDESVKRVVDNVINKYGCIDILVNNAGVPSAGPVVDLPLSAIKNTFETNVFGSLRMVQAVAPHMAARRQGKIVNIGSLVGLAARPWAGSYAASKAALHALTDALRLELGHFGIDVVNVVCGNVKSNIVKSVLSTHDSMPEWKLFKPFEAGFRERLVRSQSSKSTPTDEFAKHTVAAVLKKKTPAWFSYGQYTTVMAIMYHLPLCVRDFLFKKDMKL* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2069 280 PANTHER BNAC02G00550D PROTEIN 4 278 - -
Psa5g2069 280 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 141 169 IPR020904 GO:0016491
Psa5g2069 280 PRINTS Glucose/ribitol dehydrogenase family signature 12 29 IPR002347 -
Psa5g2069 280 PRINTS Glucose/ribitol dehydrogenase family signature 81 92 IPR002347 -
Psa5g2069 280 PRINTS Glucose/ribitol dehydrogenase family signature 128 144 IPR002347 -
Psa5g2069 280 PRINTS Glucose/ribitol dehydrogenase family signature 154 173 IPR002347 -
Psa5g2069 280 Gene3D - 10 265 - -
Psa5g2069 280 PANTHER NADPH-DEPENDENT 1-ACYLDIHYDROXYACETONE PHOSPHATE REDUCTASE 4 278 - -
Psa5g2069 280 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 11 265 IPR036291 -
Psa5g2069 280 CDD 17beta-HSD-like_SDR_c 11 255 - -
Psa5g2069 280 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 10 183 - -
Psa5g2069 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 81 92 IPR002347 -
Psa5g2069 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 134 142 IPR002347 -
Psa5g2069 280 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 173 IPR002347 -
Psa5g2069 280 Pfam short chain dehydrogenase 11 196 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2069 Psa-Chr5 159534524 159535711 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2069 11 205 Acyl Lipid Metabolism Gene Families AT3G55290 30.918 1.64e-16 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2069 - - mtr:MTR_3g087850 417.157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2069 5 159534524 159535711 Psa5g2069 5 159534524 159535711 ECH