Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2040 ATGGCTCAAACTATGTTGCTCATGTCTAGTGTCTCCAGTACCTATTCTGTTCCCTTGAACAAAGATCCTTTGCTTCAATTACAGTGTCAAAGATTGAAGCCTAGGTTTTCTGATATCTCATTTAGCCCACTTTCTTCTAATTCTAAGTCTTTTTCATCTCGCACTTTCAAAACTCTGGCTCTATTCAAATCAAAGACCAAAGCCCCTGCTAAGGTTGTACCAAAACAAAAACCAAAGGTTGAAGATGGTGTCTTTGGAACTTCTGGAGGATTTGGTTTCACTAAGCAGAACGAACTCTTTGTTGGTCGTGTTGCTATGATCGGTTTTGCTGCATCAATTTTGGGTGAAGGAATAACTGGGAAAGGAATTCTATCACAATTGAATTTGGAAACTGGAATTCCAATTTATGAAGCTGAGCCTCTCCTCCTATTCTTCATCATTTTTACACTTCTAGGAGCCATTGGAGCTCTAGGTGACCGTGGTAAATTCGTCGACGATGAACCTACCACCGGAGGCGTTATTCCACCCGGAAAAGGCTTCAGACAAGCTCTCGGTCTCAGCGAAGGAGGTCCTTTATTTGGATTCACCAAATCCAATGAACTGTTTGTTGGAAGATTGGCTCAACTGGGATTTGCTTTCTCTTTGATTGGAGAGATTATTACCGGGAAGGGAGCACTAGCTCAACTCAACATTGAAACTGGTGTACCAATCAATGAGATTGAGCCACTTGTGTTGTTCAATGTTGCTTTCTTCTTCATTGCTGCTTTGAATCCTGGAACTGGGAAATTTGTAACAGATGAGGAAGAAGATTAG 813 0.4145 MAQTMLLMSSVSSTYSVPLNKDPLLQLQCQRLKPRFSDISFSPLSSNSKSFSSRTFKTLALFKSKTKAPAKVVPKQKPKVEDGVFGTSGGFGFTKQNELFVGRVAMIGFAASILGEGITGKGILSQLNLETGIPIYEAEPLLLFFIIFTLLGAIGALGDRGKFVDDEPTTGGVIPPGKGFRQALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLFNVAFFFIAALNPGTGKFVTDEEED* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2040 270 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 193 256 - -
Psa5g2040 270 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 1 179 - -
Psa5g2040 270 Gene3D Chlorophyll a/b binding protein domain 136 241 - -
Psa5g2040 270 Gene3D Chlorophyll a/b binding protein domain 55 135 - -
Psa5g2040 270 PANTHER PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC 1 179 - -
Psa5g2040 270 PANTHER PHOTOSYSTEM II 22 KDA PROTEIN, CHLOROPLASTIC 193 256 - -
Psa5g2040 270 Pfam Chlorophyll A-B binding protein 89 215 IPR022796 -
Psa5g2040 270 SUPERFAMILY Chlorophyll a-b binding protein 79 249 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2040 K03542 - gmx:100807355 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2040 5 157577148 157579494 Psa5g2040 5 157577148 157579494 ECH