Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2008 ATGCCACCTTCTCCTTCAGAAAATCGAACCAAATGGAGGAAGCGGAAGAGAGATTCGCAAATCACCAGGCGTCAACAGAAGCACGACGAGGAAGAAGACGACGACGAAGAAAACCCCAATGCCGACGAAGACAACGAACGCGACTATGATTCAGAGGATCAACACAACCAAAACCAAAACCATAACCACCCTAATTCTCAGCATCAACAAGAGATTGAGATTCTATCCGATCACGGTGTTCAGATTTCCCAGTTTCCGGTTGTGATTAAGCGCGCTGTTAATCGACCTCACTCATCTGTAACTGCAATTGTTGCTCTTGAACGAGCTATGGAGTTGGGTTTGGGAGATAGCAAAGGTCAGCTACAGAATCCTCCGTTTTTGGAGAATGTTTCTCATGGTCAGCTTCAAGCGCTGTCGACTGTTCCTTCTGATAGCCTTGCTTTGGATCAGGATCGTGCTGATTCCTCTTATGTTATTACTCCGCCCCCTATTTTGGAAGGCCGTGGTGTTGTGAAGCGATTTGGAAGTAGGGTTCTTGTGCTTCCAATGCATTCAGATTGGTTTTCACCTGGAACAGTGCATCGGTTAGAGAGACAAGCAGTGCCTCATTTCTTTTCAGGGAAATCACAGGATCTTACTCCGGAAAAGTACATGGAATGCAGGAACTACATTGTTGCACTATATATGGAGGAGCCGAAGAAGAGGATTACTGCCTCCGATTGTCAGGGATTGCAGGTTGGGGTTGATCAAGAAGATTTGTCTCGAATTCATAGGTTCCTTGACCACTGGGGTATTATCAATTACTGTGCCCGGACGCCAAGTCACGAGCCTCCAAATCCCGTGTCATGTCTGAAAGAGGATACTGGTGGAGAAGTCCGCGTGCCATCTGAGGCCTTGAAGTCTATAGATAGTTTGATCAAATTTGATAAGCCCAACTGTAAGCTCAAAGCAGAAGAAATTTATTCACCATTGACAACACATAGCGCTGATGTACCTGATCTGGACGGCAGAATAAGAGAGCATCTGTCTGAAAATCATTGCAATTATTGTTCTTGTCCACTTCCTGCTGTTTCCTATCAGTCTCAGAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTCCATGATGGAAAATTTGTCATCGGTCATTCAAGTATAGATTTTTTAAGGGTGGATTCAACAAGAGATTATGGTGAACTAGATGGGGAAAGTTGGACTGATCAAGAAACTTTGCTGCTGCTCGAAGCAATGGAGATTTACAACGAGAATTGGAATGAAATTGCCGACCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTTCGTCTACCCATGGAAGATGGGAAATTGGAAAATATCAATGTTCCAAGCATGTCTTTGTCATCCAGTGCGATGAATAGAGATGATAATGGAAGATCACATCTTTACTCGAATGGAGATTCTGCAGGACCTGTTCATCAAATCAGAGATTCTGACAACCGCCTTCCTTTTGCTAATTCTGGAAATCCTGTTATGGCCCTGGTTGCTTTTTTAGCCTCTGCGGTTGGACCAAGAGTAGCGGCTTCCTGTGCTCATGCAGCATTATCAGTATTGTCAGGGGATAATACTGGCTCCCAGACGGAGGCATCGGGGCATGATAATAGGACAAATCCAGAAAACATACATTGTAGAGATGGTGGCTCTCGAGGAGAAGCTGCAATTTCAAATAATCATAATGAGGAAAAGGCAAAAGCACTTAGTTCGCGGGATCAAAATGAGGGTAGGACCACCCCACTCTCTGCTGAAAAAGTTAATGAAGCAGCTAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCCGATCACGAAGAACGAGAAATTCAGAGATTATGTGCTAATATAATTAATCATCAGTTGAAAAGACTGGAATTGAAGCTGAAACAGTTTGCAGAAATTGAAACATTGTTGATGAAGGAATGCGAACAAGTGGAAAGAGCAAAACAGAGGTTTGCTGCTGAACGCACCCGCGTCATATCAGCACGTTTTGGAACTGCAGGAACTACGCCTGCAATGAATGCATCTGGTGTTGGTCCTTCAATGGTTAGTAATGGCAATAATAGGCAACAAATGATGTCTGCTTCTCCCTCGCAGCCCAGCATCTCTGGGTATGGCAACAACCAACCAGTTCATCCACACATGTCCTTTGCCCAAAGACCTTCAATGTTTGGGTTGGGGCAAAGGTTGCCCCTATCTATGATACAACAATCACAGTCAACTTCTTCAGGTGCCATGTTCAATACTCCTGGTAATGTGCAGCCTGGTACCAATCATCCATTGTTGAGGCCCGTGTCAGGAACTAATTCTGGTTTAGGATAA 2373 0.4421 MPPSPSENRTKWRKRKRDSQITRRQQKHDEEEDDDEENPNADEDNERDYDSEDQHNQNQNHNHPNSQHQQEIEILSDHGVQISQFPVVIKRAVNRPHSSVTAIVALERAMELGLGDSKGQLQNPPFLENVSHGQLQALSTVPSDSLALDQDRADSSYVITPPPILEGRGVVKRFGSRVLVLPMHSDWFSPGTVHRLERQAVPHFFSGKSQDLTPEKYMECRNYIVALYMEEPKKRITASDCQGLQVGVDQEDLSRIHRFLDHWGIINYCARTPSHEPPNPVSCLKEDTGGEVRVPSEALKSIDSLIKFDKPNCKLKAEEIYSPLTTHSADVPDLDGRIREHLSENHCNYCSCPLPAVSYQSQKEVDILLCTDCFHDGKFVIGHSSIDFLRVDSTRDYGELDGESWTDQETLLLLEAMEIYNENWNEIADHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSSAMNRDDNGRSHLYSNGDSAGPVHQIRDSDNRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALSVLSGDNTGSQTEASGHDNRTNPENIHCRDGGSRGEAAISNNHNEEKAKALSSRDQNEGRTTPLSAEKVNEAAKAGLSAAAMKAKLFADHEEREIQRLCANIINHQLKRLELKLKQFAEIETLLMKECEQVERAKQRFAAERTRVISARFGTAGTTPAMNASGVGPSMVSNGNNRQQMMSASPSQPSISGYGNNQPVHPHMSFAQRPSMFGLGQRLPLSMIQQSQSTSSGAMFNTPGNVQPGTNHPLLRPVSGTNSGLG* 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2008 790 MobiDBLite consensus disorder prediction 31 49 - -
Psa5g2008 790 Pfam SWIRM domain 182 268 IPR007526 GO:0005515
Psa5g2008 790 ProSiteProfiles SWIRM domain profile. 179 277 IPR007526 GO:0005515
Psa5g2008 790 ProSiteProfiles SANT domain profile. 400 451 IPR017884 -
Psa5g2008 790 SMART sant 401 449 IPR001005 -
Psa5g2008 790 PANTHER SWI/SNF COMPLEX-RELATED 62 789 - -
Psa5g2008 790 MobiDBLite consensus disorder prediction 1 70 - -
Psa5g2008 790 Pfam Myb-like DNA-binding domain 404 446 IPR001005 -
Psa5g2008 790 MobiDBLite consensus disorder prediction 538 562 - -
Psa5g2008 790 SUPERFAMILY Homeodomain-like 402 455 IPR009057 -
Psa5g2008 790 MobiDBLite consensus disorder prediction 770 790 - -
Psa5g2008 790 CDD SANT 404 446 IPR001005 -
Psa5g2008 790 Pfam SWIRM-associated region 1 606 682 IPR032451 -
Psa5g2008 790 MobiDBLite consensus disorder prediction 577 600 - -
Psa5g2008 790 ProSiteProfiles Zinc finger ZZ-type profile. 342 396 IPR000433 GO:0008270
Psa5g2008 790 ProSiteProfiles Myb-like domain profile. 404 447 IPR001005 -
Psa5g2008 790 SUPERFAMILY Homeodomain-like 178 275 IPR009057 -
Psa5g2008 790 Gene3D - 401 451 - -
Psa5g2008 790 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 62 789 - -
Psa5g2008 790 Gene3D - 185 272 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2008 Psa-Chr5 155376262 155384379 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2008 347 443 EF-hand Containing Proteins AT3G07740 34.906 1.33e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2008 K11649 - gmx:100780440 1273.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2008 5 155376262 155384379 Psa5g2008 5 155376262 155384379 ECH