Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1986 ATGGAGGAGTTGCCGGAGTGCCCGGTGTGTCTTCAAAACTACGACGGTGAAAACGCGATTCCACGAGTGCTACCATGCGGCCACACCGTTTGTGAAGCTTGTCTCGTGGAGCTTCAGGAGCGATTTCCGAACACTATTCGTTGCCCTGCGTGTACTCAACTCGTTAAATACTCTCCCAAACAAGGTCCTTCTTCTCTTCCCAAAAATATTGATCTTCTTAGAATCTGCCTCCAACAACACTCTTCATCTAAAAATCGGAATACGAATCATCAACGGTCCTTGATTAATTATGGCTATTCCTCTCGGTTCTGGTCTGATGAGTTTTACGTTGCTTGGAAGGAATGGATTCTTCCGAACGATGTCGTTTCGGTTGACGAGAATGGTTTTGGTAGGTTTAGTTCGGGTTCTAAGGGTAGGGTTTGCTTCGGAGTTAACCGTGCGGGTATCGTTGAAGCTGTGATTGCTTTGAATTTGGAAGGTTTGGTTGCTGGATGTTTGGGACTTCCATGCTTCTCTTTTGATGAGCTTGGTGGTGTTTGTATTGATTTGAATGAGGTGTTGGTGATGGGAAAGAAGATTGTGGATCAGGTTTCTGGTGGCGCGGGTGATGATCATCAAGCCGTGTGTAGGGATTGTTTGAACAATGAGCTTTTTATTAGCCCAGAGGTTTTGTCTATGTTATTGCGCAAGGGGATCATCAACCCAGAGAGTGGGGATTCAAGGCATCCGGTCGGGTATGGCTCAGATGTATGGTCACTGGCTTGTGTGTTGTTGCAACTTCTTTTTAGAAATGCACTCCCTCAGATTACCTTGCAAATGAGTGAAGAAAACAGTCTTGATGTTTCGGCTAGTTACATTTCTTGGGTGGAGAAAGTTTGTTCTGTTTTGGAAGAAAAAATTGGTTCTGATAACCTATCACTTAAACAGACTCTTTGCAAATGTTTAGACATTAATCCTGGAAACCGTCCTGATGTAGTGGATGTAAGGAAATCCATTCAAGATGTGCTAGTCAAGCATCAATTTGGTTTTCTGGGAGAAACAGAGGTCATAGTAAATAGGAACAACACAGGTCACCCTGTGATTCTTGCTAAGTTGTGTCAGTTGCCTCAGGAAAGATCTAAAGAAACGAGAGATCATGAGTTGAAGGCGAAAGCAAATGGAGGTCAACCTGAGTTTCTTCAAAGTGCGGAAAATACATCTGACAAAGTCTTCCCTGCAAGCTTATCTCAGGGAATGACTGAGCTTAAAGATCTGCAAGGCCATCTTGGTTCTATCACTGGTTTAGCTGTAGGAGGGGGATATTTGTTTAGCTCCTCTTTTGATAAAACTGTCCGTGTATGGTCCTTGCAGGACTTTTCTCATTTACATACATTTAGAGGTCATGAGAATAAAGTTATGGCTCTAGTTTATGTTGATGACGAAGAATCATTATGTATAAGTGGTGACGGTGGTGGGGGCATATTTGTGTGGGAGATTGCTGCATCTCTTAGGCAAGAACCCTTGAGGAAATGGTATGAGCAGAAGGATTGGCGCTTTAGTGGTATCCATTCGATGACTGCTTTCGGAAACCTTCTCTACACTGGAAGTGGAGATAGAACAATAAAAGCTTGGTCATTAAAGGATGGATCTTTGATCTGCACAATGGATGGCCACAAATCTGTAGTTTCCACACTTTCAGTATGTGATGATGTTCTTTACAGTGGTAGTTGGGATGGAACTATCCGATTGTGGAGTCTTAATGATTACAGCCCGTTGGCAGTACTAGGGGAAGACTTGCCTGGAGACATGAAGTCTATCCTGGCTATTACTGTCAATAGGAATTTGCTGGTTGCAGCATATGAGAATGGATGCATAAAGGTCTGGAGTAACGACGTGTTCATGACTTCCAAAACATTGCATAGTGGTGCAATTTTTGCTCTGAGTATGCAGGGAAAATGTCTCTATACTGGAGGTTGGGACACAAATGTTAATATACAGGAATTATCAGGAGACGAGTTAGAACTGAATGTCAACGCATTTGGATCCATTTCTTCGGGTTCTGTTGTGACAGCTATGTTATGCAGTCAAGGAAAACTTTACGTTGGATGTGGTAACAAGTCTATCAAGGTTTATGGTGCTAAATAG 2124 0.4289 MEELPECPVCLQNYDGENAIPRVLPCGHTVCEACLVELQERFPNTIRCPACTQLVKYSPKQGPSSLPKNIDLLRICLQQHSSSKNRNTNHQRSLINYGYSSRFWSDEFYVAWKEWILPNDVVSVDENGFGRFSSGSKGRVCFGVNRAGIVEAVIALNLEGLVAGCLGLPCFSFDELGGVCIDLNEVLVMGKKIVDQVSGGAGDDHQAVCRDCLNNELFISPEVLSMLLRKGIINPESGDSRHPVGYGSDVWSLACVLLQLLFRNALPQITLQMSEENSLDVSASYISWVEKVCSVLEEKIGSDNLSLKQTLCKCLDINPGNRPDVVDVRKSIQDVLVKHQFGFLGETEVIVNRNNTGHPVILAKLCQLPQERSKETRDHELKAKANGGQPEFLQSAENTSDKVFPASLSQGMTELKDLQGHLGSITGLAVGGGYLFSSSFDKTVRVWSLQDFSHLHTFRGHENKVMALVYVDDEESLCISGDGGGGIFVWEIAASLRQEPLRKWYEQKDWRFSGIHSMTAFGNLLYTGSGDRTIKAWSLKDGSLICTMDGHKSVVSTLSVCDDVLYSGSWDGTIRLWSLNDYSPLAVLGEDLPGDMKSILAITVNRNLLVAAYENGCIKVWSNDVFMTSKTLHSGAIFALSMQGKCLYTGGWDTNVNIQELSGDELELNVNAFGSISSGSVVTAMLCSQGKLYVGCGNKSIKVYGAK* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1986 707 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Psa5g1986 707 CDD RING-HC_TRIM32_C-VII 6 52 - -
Psa5g1986 707 Gene3D - 500 707 IPR015943 GO:0005515
Psa5g1986 707 ProSitePatterns Zinc finger RING-type signature. 26 35 IPR017907 -
Psa5g1986 707 ProSiteProfiles Zinc finger RING-type profile. 7 52 IPR001841 -
Psa5g1986 707 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 548 580 - -
Psa5g1986 707 PRINTS G protein beta WD-40 repeat signature 435 449 IPR020472 -
Psa5g1986 707 PRINTS G protein beta WD-40 repeat signature 525 539 IPR020472 -
Psa5g1986 707 PRINTS G protein beta WD-40 repeat signature 565 579 IPR020472 -
Psa5g1986 707 SUPERFAMILY Protein kinase-like (PK-like) 215 338 IPR011009 -
Psa5g1986 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 522 547 IPR001680 GO:0005515
Psa5g1986 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 418 457 IPR001680 GO:0005515
Psa5g1986 707 PANTHER - 3 127 IPR044715 -
Psa5g1986 707 PANTHER - 151 704 IPR044715 -
Psa5g1986 707 ProSiteProfiles Trp-Asp (WD) repeats profile. 548 587 IPR001680 GO:0005515
Psa5g1986 707 SMART ring_2 7 51 IPR001841 -
Psa5g1986 707 SUPERFAMILY RING/U-box 4 59 - -
Psa5g1986 707 Pfam RING-type zinc-finger 7 49 IPR027370 -
Psa5g1986 707 SUPERFAMILY WD40 repeat-like 412 704 IPR036322 GO:0005515
Psa5g1986 707 Gene3D - 391 499 IPR015943 GO:0005515
Psa5g1986 707 Gene3D Transferase(Phosphotransferase) domain 1 198 341 - -
Psa5g1986 707 SMART WD40_4 623 660 IPR001680 GO:0005515
Psa5g1986 707 SMART WD40_4 451 491 IPR001680 GO:0005515
Psa5g1986 707 SMART WD40_4 581 622 IPR001680 GO:0005515
Psa5g1986 707 SMART WD40_4 411 448 IPR001680 GO:0005515
Psa5g1986 707 SMART WD40_4 669 705 IPR001680 GO:0005515
Psa5g1986 707 SMART WD40_4 541 578 IPR001680 GO:0005515
Psa5g1986 707 SMART WD40_4 497 538 IPR001680 GO:0005515
Psa5g1986 707 Pfam WD domain, G-beta repeat 415 448 IPR001680 GO:0005515
Psa5g1986 707 Pfam WD domain, G-beta repeat 543 578 IPR001680 GO:0005515
Psa5g1986 707 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 418 450 - -
Psa5g1986 707 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 151 704 - -
Psa5g1986 707 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 3 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1986 Psa-Chr5 153763546 153769113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1986 433 650 Acyl Lipid Metabolism Gene Families AT3G18860 28.947 1.39e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1986 - K03070 lja:Lj1g3v0874380.1 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1986 5 153763546 153769113 Psa5g1986 5 153763546 153769113 ECH