Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1985 ATGGCAACACTCTCACACCCATTCACACACTTCTTCACCGTTCAGAGAACCACTCCATCTCACCCCAATGCCTTCTTCATTCGACCCTCTCATTCCCTCCCACGCCTCCCACGACGTCGTTTCTCTCCCGTATTCGTTGCCGCCACATCTATTAAGGAAAATCTTGGTCGCATTCATAAGACTTTCACTGACTTCACTAGCTTAAACCACTGGGTAGTTAACGACTACTTCCGTCTGGTGGACTCCGTCAATGCTTTCGAGCCTCGGATTCAGGCTCTCTCCGATGAGCAGTTGGCCGCCAAAACGGAGGAGTTTCGCCTCAGGCTCGCACGAGGGGAAACACTGGCAGATATTCAAGCTGAGGCCTTCGCAGTTGTTCGTGAGGCTGCCATAAGAAAACTTGGAATGCGCCATTTTGATGTTCAGATTATCGGTGGAGCTGTGCTGCATGATGGGTCAATTGCTGAGATGAAAACAGGAGAGGGGAAAACCTTAGTCTCCACGCTAGCCGCATATCTTAACGCCTTGACCGCTGAGGGTGTCCATGTTGTAACTGTCAATGATTATTTAGCTCAGCGTGATGCTGAATGGATGGGGCGTGTTCATCGTTTCTTAGGTCTTTCTGTTGGTCTTATTCAGAGGGGGATGAACTCTGCAGAGCGGAGATTCAACTATAGATGTGATATAACATACACGAATAATTCGGAGCTTGGCTTTGATTACTTGAGAGATAATCTTGCTGGAAATAGCGAACAGCTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCTATTGTTGATGAGGTGGATTCAGTACTGATAGATGAGGGAAGAAATCCGCTGTTAATCAGTGGTGAGGCTAATCAAGATGCTGCACGGTACCCTGTTGCTGCAAAAGTGGCTGAATTGCTGATACAGGGCATTCATTACAAAGTGGAACTCAAAAATAATTCGGTGGAGTTGACCGAGGAAGGAATTACTCTTGCTGAAATGGCTCTTGAAACAAATGACCTTTGGGATGAAAATGATCCCTGGGCGAGATTTGTGATGAATGCTTTAAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATTGTTAGAGATGGAAAGGCTATAATTATAAATGAGTTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAATGTTTGAAGATTCAGGCAGATTCTGTTGTCGTGGCACAAATCACATACCAGTCATTATTCAAGCTTTATCCAAAATTGTCAGGAATGACTGGAACTGCAAAAACAGAAGAGAAGGAGTTCTTAAAAATGTTTCAGACGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGTAAAGACTTGCCTATTCAAGCATTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAAGATATGTTTAGACAAGGGCGTCCTGTCTTGGTTGGGACAACTAGTGTAGAAAATTCTGAGCTTTTGGCTGGTCTGCTTAGGGAATGGGAGATTCCTCATAATGTTCTGAATGCTCGACCCAAGTATGCTGGGAGAGAAGCTGAAATTGTTGCACAGGCAGGACGGAAACATGCCATTACAATATCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGACACTGTAGTTCCTTTTTTGTCACGGGAGGATCCAAACAGTAAACTTGCTAGTGAGACCATTTCAGAAAAGATGCTTCCGAAGATAAAGGTGGGATCATCATCATTAGCCTTACTGGCTAAAACAGCCTTAATGGCAAAATATGTATCGAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGGCTATATCTTTTATCTCAGAGTCTGTTGAAATGAGTCTTTCACATGGTTTGAAAGAGCTGGAGAAGCTTGCCAATGAAGAATCTGAGATATACCCACTTGGTCCAACAGTAGCACTTGCGTATCTGTCAGTTTTAAAGGATTGTGAAGAACACTGTTTGCAAGAAGGGTCTGAGGTAAAAAGGCTTGGGGGCCTTCATGTGATTGGTACATCTTTACACGAGTCCCGAAGAATAGACAACCAGCTTCGTGGCAGAGCAGGGAGGCAGGGGGATCCGGGGTCAACAAGATTTATGATCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGATACTGAATGGGCTGTTAGACTTATATCAAAGATTACCAATGATGAGGATCTTCCCATTGAAGGTGGTGCCATTGTGAAACAGCTATTGGTATTGCAAATCAATGCAGAAAAGTTCTTCTTCGGCATAAGAAAGAACCTCGTTGAGTTTGATGAAGTATTGGAGGTGCAGCGAAAACATGTCTATGATCTAAGGCAGTTAATCTTAACCGGAGACGATGAAAGTTGTTCTCAACACATATTACAGTACATGCAAGCCGTGGTGGATGAGATTGTCTTTAATAACATTTATCCATTGAAGCATCCTCATAGTTGGGATTTGAGTAATCTCTTGAAAGAATTCAAGACAATTGGTGGAAAGCTGTTGCATGAGTCATTTGGAGGGATTAATGATGACACTTTACTAAATTCACTTGGGCTATTGAATGAAGTGAATTCAGTTGATGTTGTCAATGTATGCCTTCCAAATTTGCCAGCACCTCCAAACGCTTTCAGGGGAATTCGCAGGAAGAGCTCCTCATTAAAACGATGGCTTGCTATTTGCTCCGATGATTTAATTGAGAACGGGAAGTATCAGACAACTTCTAATCTCCTTCGCAAGTATCTTGGAGATTTTCTTATTGCTTCGTATTTAGATGTTGTTGAAGAGTCTGGTTATGATGAGGGACATGTAAAAGAGATTGAGAGAGCTGTTCTTTTGAAAACTCTGGACTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGGCTCAGCTCTGCGGTGAATGTTCGGAGCTTTGGCCACAGGAATCCTCTGGAAGAATATAAAATTGATGGTTGTCGGTTTTTCATCTCAATGCTCAGTGCAACTCGAAGGTTGACTGTAGAAGCACTCTTACGCCATTGGACATCTCCATTGGAATCTCAAGAATTATTTTTATAA 3144 0.4294 MATLSHPFTHFFTVQRTTPSHPNAFFIRPSHSLPRLPRRRFSPVFVAATSIKENLGRIHKTFTDFTSLNHWVVNDYFRLVDSVNAFEPRIQALSDEQLAAKTEEFRLRLARGETLADIQAEAFAVVREAAIRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTAEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNSAERRFNYRCDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEANQDAARYPVAAKVAELLIQGIHYKVELKNNSVELTEEGITLAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKAIIINELTGRVEEKRRWSEGIHQAVEAKECLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFQTPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEDMFRQGRPVLVGTTSVENSELLAGLLREWEIPHNVLNARPKYAGREAEIVAQAGRKHAITISTNMAGRGTDIILGGNPKMLAREIIEDTVVPFLSREDPNSKLASETISEKMLPKIKVGSSSLALLAKTALMAKYVSKSEGKSWTYQKAISFISESVEMSLSHGLKELEKLANEESEIYPLGPTVALAYLSVLKDCEEHCLQEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGGAIVKQLLVLQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHILQYMQAVVDEIVFNNIYPLKHPHSWDLSNLLKEFKTIGGKLLHESFGGINDDTLLNSLGLLNEVNSVDVVNVCLPNLPAPPNAFRGIRRKSSSLKRWLAICSDDLIENGKYQTTSNLLRKYLGDFLIASYLDVVEESGYDEGHVKEIERAVLLKTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRHWTSPLESQELFL* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1985 1047 CDD SF2_C_secA 459 730 IPR044722 -
Psa5g1985 1047 ProSitePatterns SecA family signature. 541 556 IPR020937 GO:0006605|GO:0006886|GO:0016020
Psa5g1985 1047 TIGRFAM secA: preprotein translocase, SecA subunit 83 857 IPR000185 GO:0005524|GO:0006605|GO:0006886
Psa5g1985 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 456 743 IPR027417 -
Psa5g1985 1047 Pfam SecA Wing and Scaffold domain 760 1034 IPR011116 GO:0016020|GO:0017038
Psa5g1985 1047 Hamap Protein translocase subunit SecA [secA]. 57 1038 IPR000185 GO:0005524|GO:0006605|GO:0006886
Psa5g1985 1047 Pfam SecA preprotein cross-linking domain 293 397 IPR011130 GO:0016020|GO:0017038
Psa5g1985 1047 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 65 454 IPR027417 -
Psa5g1985 1047 SMART SecA_DEAD_2 62 441 IPR011115 GO:0005524|GO:0016020|GO:0017038
Psa5g1985 1047 Pfam SecA DEAD-like domain 68 440 IPR011115 GO:0005524|GO:0016020|GO:0017038
Psa5g1985 1047 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 305 IPR014001 -
Psa5g1985 1047 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 53 1046 IPR000185 GO:0005524|GO:0006605|GO:0006886
Psa5g1985 1047 SUPERFAMILY Helical scaffold and wing domains of SecA 934 1044 IPR036266 -
Psa5g1985 1047 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 53 1046 - -
Psa5g1985 1047 Gene3D Helical scaffold and wing domains of SecA 765 873 - -
Psa5g1985 1047 CDD DEXDc_SecA 97 453 - -
Psa5g1985 1047 Gene3D - 456 762 IPR027417 -
Psa5g1985 1047 ProSiteProfiles SecA family profile. 58 762 IPR014018 -
Psa5g1985 1047 Gene3D - 78 454 IPR027417 -
Psa5g1985 1047 SMART SecA_PP_bind_2 286 397 IPR011130 GO:0016020|GO:0017038
Psa5g1985 1047 SUPERFAMILY Pre-protein crosslinking domain of SecA 285 406 IPR036670 GO:0016020|GO:0017038
Psa5g1985 1047 Gene3D Helical scaffold and wing domains of SecA 906 1038 - -
Psa5g1985 1047 PRINTS SecA protein signature 118 142 IPR000185 GO:0005524|GO:0006605|GO:0006886
Psa5g1985 1047 PRINTS SecA protein signature 156 170 IPR000185 GO:0005524|GO:0006605|GO:0006886
Psa5g1985 1047 PRINTS SecA protein signature 172 182 IPR000185 GO:0005524|GO:0006605|GO:0006886
Psa5g1985 1047 PRINTS SecA protein signature 225 245 IPR000185 GO:0005524|GO:0006605|GO:0006886
Psa5g1985 1047 PRINTS SecA protein signature 378 400 IPR000185 GO:0005524|GO:0006605|GO:0006886
Psa5g1985 1047 PRINTS SecA protein signature 415 432 IPR000185 GO:0005524|GO:0006605|GO:0006886
Psa5g1985 1047 PRINTS SecA protein signature 452 465 IPR000185 GO:0005524|GO:0006605|GO:0006886
Psa5g1985 1047 SUPERFAMILY Helical scaffold and wing domains of SecA 767 864 IPR036266 -
Psa5g1985 1047 Gene3D - 287 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1985 Psa-Chr5 153717763 153737740 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1985 K03070 - gmx:100793437 1796.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1985 5 153717763 153737740 Psa5g1985 5 153717763 153737740 ECH