Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1983 ATGGCAGTTCCAGTCATTGATTTCTCAAACCTGAATGGTGAAGAAAGAGCCAAAACTATGGCACTGATTGCTAATGGCTGTGAAGAATGGGGATTCTTCCAGTTGATCAATCATGGCATTTCTGAGGAACTTCTTGAAAGGGTGAAGAAGGTTACCTCTGAGTTCTATAAGCTGGAAAGAGAGGAGAATTTCAAGAACTCTGCAACAGTTAAGCTTCTGCATGATATAGCTGAAAAGAAAAGCAGTGAAAAGTTGGAGAATGTGGACTGGGAGGATGTTATCACTCTACTTGATGATAATGAGTGGCCAGAAAATACACAAAGTTTCAGGGAAACCATGTCAGAATATCGGTCTGAGTTAAAGAAACTGGCGGAGAAACTCACGGAAGTTATGGATGAGAATCTGGGCTTACCAAAAGGATACATTAAGAAAGCGCTGAATGGTGGAGAAGGAGACAATGCTTTCTTTGGCACTAAGGTCAGCCACTACCCACCTTGTCCCTATCCAGAACTCGTGAACGGACTACGAGCTCACACTGATGCAGGAGGTGTCATCCTACTGTTCCAAGATGATAAGGCAGGAGGTCTTCAAATGCTCAAAGATGGGGAATGGCTTGATGTCCAACCTTTGCCAAATGCCATTGTGATCAACACTGGTGATCAGATTGAGGTGCTGAGCAATGGCAGATACAAGAGTTGTTGGCATAGGGTTCTGAGCGCTACAGATGGGAACAGGAGGTCAATTGCATCCTTCTATAACCCGCCACTCAAAGCCACCATAAGTCCTGCACCACAATTGACTGAAAAAGAAAACCAACAAGTCGATGATACTTATCCTAAATTTGTTTTCGGCGACTACATGTCTATCTATGCTGAGCAGAAGTTCCTCCCCAAGGAACCGAGGTTTAGAGCTGTTAAAGCCATTTGA 927 0.4391 MAVPVIDFSNLNGEERAKTMALIANGCEEWGFFQLINHGISEELLERVKKVTSEFYKLEREENFKNSATVKLLHDIAEKKSSEKLENVDWEDVITLLDDNEWPENTQSFRETMSEYRSELKKLAEKLTEVMDENLGLPKGYIKKALNGGEGDNAFFGTKVSHYPPCPYPELVNGLRAHTDAGGVILLFQDDKAGGLQMLKDGEWLDVQPLPNAIVINTGDQIEVLSNGRYKSCWHRVLSATDGNRRSIASFYNPPLKATISPAPQLTEKENQQVDDTYPKFVFGDYMSIYAEQKFLPKEPRFRAVKAI* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1983 308 SUPERFAMILY Clavaminate synthase-like 2 303 - -
Psa5g1983 308 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 2 305 - -
Psa5g1983 308 Coils Coil 41 61 - -
Psa5g1983 308 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 5-LIKE 2 305 - -
Psa5g1983 308 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 154 254 IPR005123 -
Psa5g1983 308 Pfam 2OG-Fe(II) oxygenase superfamily 161 254 IPR044861 -
Psa5g1983 308 Coils Coil 106 133 - -
Psa5g1983 308 Gene3D - 2 308 IPR027443 -
Psa5g1983 308 Pfam non-haem dioxygenase in morphine synthesis N-terminal 3 100 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1983 Psa-Chr5 153246178 153248193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1983 1 271 Glycosyltransferase AT5G59530 32.155 3.60e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1983 K05933 - gmx:100796909 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1983 5 153246178 153248193 Psa5g1983 5 153246178 153248193 ECH