Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1969 ATGTCTGTTCTATCTAGCACCGATTTGCATCGTATTTTCGAGAAGCTAGATACAAATAACGACGGTTTTGTGAGCGTTGAAGAGATGAACTTTGTGCTGCAGAAAATTTGTAATAGTAATAATTCTCAAATTAGCTTAGAGGAGCTTGAATCTCTTATAGAAAAGAAGAGCTTAGACTTCAATGAATTCTTGTTCTTTTACAACTCTATTTCGAAACCGAACAATGATGATGACGATGAGGACGATAACTTGTTGGAGAGGGATCTTGTGAAGACTTTTAAAGTGTTTGATTTGGATGGTGATGGATTCATCACAAGCCAAGAACTTGAGTGTGTGTTGAAGAAACTTGGATTCTTGGATGAAAAAAGTGGAAAAGATTGTAGAAGCATGATTCAATTTTATGACACCAATTTGGATGGTAGGCTTGATTTTCAGGAATTCAAGAACATGATGTTGCTTACAACTGCATGA 471 0.3588 MSVLSSTDLHRIFEKLDTNNDGFVSVEEMNFVLQKICNSNNSQISLEELESLIEKKSLDFNEFLFFYNSISKPNNDDDDEDDNLLERDLVKTFKVFDLDGDGFITSQELECVLKKLGFLDEKSGKDCRSMIQFYDTNLDGRLDFQEFKNMMLLTTA* 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1969 156 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 1 154 - -
Psa5g1969 156 Pfam EF-hand domain pair 89 151 IPR002048 GO:0005509
Psa5g1969 156 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 1 154 - -
Psa5g1969 156 ProSitePatterns EF-hand calcium-binding domain. 17 29 IPR018247 -
Psa5g1969 156 CDD EFh 88 151 IPR002048 GO:0005509
Psa5g1969 156 ProSiteProfiles EF-hand calcium-binding domain profile. 4 39 IPR002048 GO:0005509
Psa5g1969 156 ProSiteProfiles EF-hand calcium-binding domain profile. 122 156 IPR002048 GO:0005509
Psa5g1969 156 Gene3D - 68 152 - -
Psa5g1969 156 SMART efh_1 8 36 IPR002048 GO:0005509
Psa5g1969 156 SMART efh_1 126 154 IPR002048 GO:0005509
Psa5g1969 156 SMART efh_1 88 116 IPR002048 GO:0005509
Psa5g1969 156 SUPERFAMILY EF-hand 8 153 IPR011992 -
Psa5g1969 156 Gene3D - 1 67 - -
Psa5g1969 156 Pfam EF hand 12 30 IPR002048 GO:0005509
Psa5g1969 156 ProSiteProfiles EF-hand calcium-binding domain profile. 84 119 IPR002048 GO:0005509
Psa5g1969 156 ProSitePatterns EF-hand calcium-binding domain. 97 109 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1969 Psa-Chr5 152871493 152872645 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1969 2 152 EF-hand Containing Proteins AT1G21550 41.401 1.24e-34 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1969 K13448 - gmx:100527117 187.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1969 5 152871493 152872645 Psa5g1969 5 152871493 152872645 ECH