Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1960 ATGGCTAATAACGCAGCTGCGTGTGCTGAGAGAGCAACCAGTGACTTGCTCATTGGTCCAGATTGGGCTATCAATATAGAATTGTGTGATATCATTAACATGGACCCTAGGCAAGCAAAGGATGCACTGAAGATACTTAAGAAGCGCTTGGGCAGTAAAAATCCCAAAACACAGCTGCTGGCTCTTTTTGTACTGGAGACCCTTACTAAAAATTGTGGCGAAAGTGTATTTCAGCAGATCATTGAGCGTGATATATTGCACGAAATGGTTAAGATAGTGAAGAAGAAGCCGGATTTAAGTGTGAGAGAAAAGATACTGATTTTAATTGATGCATGGCAAGAAGCTTTTGGAGGCCCAAGTGGAGCTTTTCCCCAATACTATGCAGCATATAACGAACTAAAGGCTGCTGGAGTTGAATTTCCACCAAGAGAAGAAAATAGTGTGCCATTTTTCACGCCTCCTCAAACTCAGCCGATTATTCATTCTGCTGCAGAATTTGATGATGCTGCTATTCAGGCTTCTCTTCAATCAGATGCATCTGACCTTAGTGTATTAGAGATTAAAAATGCTCAAGGGCTAGCTGATGTTTTGACGGAAATGCTCAGTGCCTTGAATCCGAAAGACCCCGAGGGCCTGAAGGAGGAAGTGATTGTTGATCTTGTTGACCAATGCCGTTCTTACCAGAAACGGGTCATGCTTCTTGTGAGCAATACTCTGGATGAGGAGCTTTTAGGTCTGGGATTAGCACTGAATGACAGCCTTCAGCGAGTACTCCGTCAACATGACGATATTGCAAAAGGAACTGCTAATTCAGGTGCAAGAGAAGTAGAAACTCCAGTTCTGCCGCTTGTAAATGTTAACCATGAAGATGATGACTCAGAAGATGATTTTGGTCAATTAGCCCATAGGTCTTCACGGGATACTCATGCACAGAATCGGAAACCAGCCTATGACAAGCCAGAGTCAGTGAGGATGAACTCGCTTATTCCCCCACCACCAGCATCAAAGAGGCCAGTCTACTCTGGTACTGGCATGGTTGACTATCTTAGTGGTGATACATACAAGGCCGAAGGATCCGTTGAAAACGCAGAACCAACTTCATTTGCAGCTCCTCATCATTCTATCCCTAATCCTACCTCATCAACTATTCCAACAGAATCTTCACCCCATCCTCATGTGACTACTACCTCATCACCAATTTTTAGCAGACAGCCTATATATGACGAGCCAAAGTCTTCAGAACAGTTGCCTCCAGCTCCCTGGGATACACAAACTCCTGTTGTCATTCCACCCCCACCTTCAAAGTATAATCAGAGACAACAGTTTTTTGAGAAAAAAGGTTCATCTCATTCGAGCAATGGATCAAGTTCGTCTAGTGACAGCTTGGTGGGACAAACTCAAAGTCTGTCTCTGAATTCATCCACCCCAACCAAAGAACAGAAGCCAGAAGATGCACTTTTCAAAGATCTAGTTGATTTTGCAAAATCAAAAACCTCTTCATCTTCTAAACCCAATAGGTTATATTGA 1527 0.4329 MANNAAACAERATSDLLIGPDWAINIELCDIINMDPRQAKDALKILKKRLGSKNPKTQLLALFVLETLTKNCGESVFQQIIERDILHEMVKIVKKKPDLSVREKILILIDAWQEAFGGPSGAFPQYYAAYNELKAAGVEFPPREENSVPFFTPPQTQPIIHSAAEFDDAAIQASLQSDASDLSVLEIKNAQGLADVLTEMLSALNPKDPEGLKEEVIVDLVDQCRSYQKRVMLLVSNTLDEELLGLGLALNDSLQRVLRQHDDIAKGTANSGAREVETPVLPLVNVNHEDDDSEDDFGQLAHRSSRDTHAQNRKPAYDKPESVRMNSLIPPPPASKRPVYSGTGMVDYLSGDTYKAEGSVENAEPTSFAAPHHSIPNPTSSTIPTESSPHPHVTTTSSPIFSRQPIYDEPKSSEQLPPAPWDTQTPVVIPPPPSKYNQRQQFFEKKGSSHSSNGSSSSSDSLVGQTQSLSLNSSTPTKEQKPEDALFKDLVDFAKSKTSSSSKPNRLY* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1960 508 Pfam GAT domain 193 267 IPR004152 GO:0035091|GO:0043130
Psa5g1960 508 ProSiteProfiles GAT domain profile. 177 266 IPR004152 GO:0035091|GO:0043130
Psa5g1960 508 MobiDBLite consensus disorder prediction 288 340 - -
Psa5g1960 508 SUPERFAMILY ENTH/VHS domain 8 142 IPR008942 -
Psa5g1960 508 PANTHER TOM1-LIKE PROTEIN 4 1 506 - -
Psa5g1960 508 CDD VHS 10 135 - -
Psa5g1960 508 Gene3D - 2 158 IPR008942 -
Psa5g1960 508 MobiDBLite consensus disorder prediction 434 480 - -
Psa5g1960 508 Gene3D - 175 273 IPR038425 -
Psa5g1960 508 PIRSF TOM1 1 508 IPR014645 -
Psa5g1960 508 MobiDBLite consensus disorder prediction 372 403 - -
Psa5g1960 508 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Psa5g1960 508 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Psa5g1960 508 SUPERFAMILY GAT-like domain 145 267 - -
Psa5g1960 508 MobiDBLite consensus disorder prediction 357 485 - -
Psa5g1960 508 MobiDBLite consensus disorder prediction 295 320 - -
Psa5g1960 508 PANTHER TOM1-LIKE PROTEIN 1 506 IPR044836 GO:0035091|GO:0043130|GO:0043328
Psa5g1960 508 Pfam VHS domain 9 133 IPR002014 GO:0035091|GO:0043130
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1960 Psa-Chr5 151752163 151758941 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1960 - - gmx:100792343 816.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1960 5 151752163 151758941 Psa5g1960 5 151752163 151758941 ECH