Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1956 ATGATCCAACACCCACGCGTCGCCGCTGCCGTCGCCGCCACGACCACCAATCAAGTAATCGAATCAATCATCAACTACCTAAAAGTTGGTCGAATCCAAAAAGCCGCGTCCATTCTCTTCGCATTCCCACTACCATTCCCTCATTCTCTCTACGCTCACTTCTTCCGTCATTGTTCCTCTCCAAAAGCCATCGTTGCAGCTCATAAGGTTGAGTTCCATTTAGTCGCCACCTCTCCTAACCCACCCATATTCCTCCGCAACCGCGCCCTCGAAGCCTATGCTAAATGCTCCTCTCTTCATGATGCCAGGGAACTGTTTGACCAAATGCCTCACAGAGATGGTGGTTCTTGGAATGCCTTGATAACTGCTTATTCTCGATTGCGTTACCCGCATGAAGCACTTTCGTTGTTCCTTTCCATGAATAGGTCTGGTGTTCCTGCCAATAAGATCACCTTTGCCGGTGTTCTTTCTTCATGTGCTGCTGTTTCTGAGCTTCCTCTCTCCCAACAGGTTCACGGGCTTGTCGTGAAATTTGGTTTTTGTGGAAATGTGATAATTGGGAGTGCCCTTGTTGATGTTTATGCTAAATGTGGGGTTATGGTGTATGCTCGAAGGATGTTTTATGAGATGCCCCGTCGCAATGCTGTCACTTGGAATGTTATTGTAAGGAGGTATCTTGATGTTGGGGATGCAAAGGAAGCTGTTTTAATGTTCACTCGAATGTTTTCTGCTAGAGTTAAGCCGTTGAATTTTACATTCTCTAATGCTCTTGTTGCTTGTTCGAGTATACATGCGCTTGAGGAGGGGATGCAAATTCATGGGGTTGTTGTGAAATGGGGATTCTGTGAGGACAATGTTGTTTCAAGCTCTCTAATCAATATGTATGTCAAGTGTGGTGAATTGGAGAATGGTTCTCGGGTTTTTCATCAGCTTGTTTTAAAAGATTTGGTGTCGTGGACTTGCATTGTGTCGGGGTATGCAATGAGTGGGAAAACATGGGACGCCAGAAGGCTTTTTGATAAGATGCCTGAACGAAATGTGATCTCGTGGAATGCTATGTTGGCTGGATATACCCGATTCTTTAAATGGTATGAAGCATTAGATTTTATGGGTTTGATGCTTGACAATGTTAAGGACTTGGATCATGTCACTCTTTGCTTGATGTTAAATGTTTCTGCGGGACTTTCGGATCATGAAATGGGGAAACAACTTCATGGCTATGTTTATCGACATGGTTTTCACTCAAACCTTATGGTTGGCAATGCCCTTCTTGACATGTATGGTAAATGCGGGAACTTGAACGGTGCCAGAGCATGGTTTAATCTGATGAGTAATTGGCGTGACATGGTTTCTTGGAATGCTTTATTGGCTAGCTATGGTCATCATCATTTAAGCGAACAAGCACTAACAATGTTTTCAGCGATGCAATGGGAAACGAAACCAAGCAAATATTCTTTTGGAACCCTTTTGGCAGCATGTGCAAATACTTATGCTCTACGCCACGGCAAGCAAATTCATGGATTCATCATTAGACATGGATTTCAGATAGATACTGTAATCAGGACTGCTTTGATTTACATGTACTGTAAATGCTACTGTCTTGAGTATGCTGTTGAAGTTCTGAAAGGCACAGTCTCTAGGGATGTGATAATGTGGAATACGCTAATTTTGGGATGTTGTCACAATCATAGGGGAAGAGATGCACTTGAACTTCTCGGGATAATGGAAGCAGAAGGCATCAAGCCAGACCACGTGACCTTTGAGGGCATTCTTCTTGCTTGTGTTGAAGAAGGCCTTGTTGAGTTTGGCACCCATTGCTTCAACTCTATGAGCAATGAATACCATGTCTTGCCTCAAATGGAGCATTATGACTGCATGATTGAACTCTACAGTCGGCATGGATGCATGGATGAGCTCGATAATTTTATGAAAACAATGACAATAGAGCCTACTCTTCGCATGTTGGAACGAGCCCTTGATGCTTGTCAGAAAAATGAGTCTCCAAGACTGGGCCAATGGATTGCTGAAAAAATTAATAAATTTGAACATTAA 2052 0.4327 MIQHPRVAAAVAATTTNQVIESIINYLKVGRIQKAASILFAFPLPFPHSLYAHFFRHCSSPKAIVAAHKVEFHLVATSPNPPIFLRNRALEAYAKCSSLHDARELFDQMPHRDGGSWNALITAYSRLRYPHEALSLFLSMNRSGVPANKITFAGVLSSCAAVSELPLSQQVHGLVVKFGFCGNVIIGSALVDVYAKCGVMVYARRMFYEMPRRNAVTWNVIVRRYLDVGDAKEAVLMFTRMFSARVKPLNFTFSNALVACSSIHALEEGMQIHGVVVKWGFCEDNVVSSSLINMYVKCGELENGSRVFHQLVLKDLVSWTCIVSGYAMSGKTWDARRLFDKMPERNVISWNAMLAGYTRFFKWYEALDFMGLMLDNVKDLDHVTLCLMLNVSAGLSDHEMGKQLHGYVYRHGFHSNLMVGNALLDMYGKCGNLNGARAWFNLMSNWRDMVSWNALLASYGHHHLSEQALTMFSAMQWETKPSKYSFGTLLAACANTYALRHGKQIHGFIIRHGFQIDTVIRTALIYMYCKCYCLEYAVEVLKGTVSRDVIMWNTLILGCCHNHRGRDALELLGIMEAEGIKPDHVTFEGILLACVEEGLVEFGTHCFNSMSNEYHVLPQMEHYDCMIELYSRHGCMDELDNFMKTMTIEPTLRMLERALDACQKNESPRLGQWIAEKINKFEH* 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1956 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Psa5g1956 683 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 488 556 - -
Psa5g1956 683 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 13 471 - -
Psa5g1956 683 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 557 680 - -
Psa5g1956 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Psa5g1956 683 Pfam PPR repeat family 116 160 IPR002885 -
Psa5g1956 683 Pfam PPR repeat family 548 594 IPR002885 -
Psa5g1956 683 Pfam PPR repeat family 448 495 IPR002885 -
Psa5g1956 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Psa5g1956 683 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 488 556 - -
Psa5g1956 683 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 13 471 - -
Psa5g1956 683 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 557 680 - -
Psa5g1956 683 Pfam PPR repeat 421 444 IPR002885 -
Psa5g1956 683 Pfam PPR repeat 90 111 IPR002885 -
Psa5g1956 683 Pfam PPR repeat 317 347 IPR002885 -
Psa5g1956 683 Pfam PPR repeat 622 646 IPR002885 -
Psa5g1956 683 Pfam PPR repeat 216 243 IPR002885 -
Psa5g1956 683 Pfam PPR repeat 289 312 IPR002885 -
Psa5g1956 683 Pfam PPR repeat 188 214 IPR002885 -
Psa5g1956 683 Pfam PPR repeat 348 375 IPR002885 -
Psa5g1956 683 Gene3D Tetratricopeptide repeat domain 269 399 IPR011990 GO:0005515
Psa5g1956 683 Gene3D Tetratricopeptide repeat domain 400 502 IPR011990 GO:0005515
Psa5g1956 683 Gene3D Tetratricopeptide repeat domain 169 268 IPR011990 GO:0005515
Psa5g1956 683 Gene3D Tetratricopeptide repeat domain 601 681 IPR011990 GO:0005515
Psa5g1956 683 Gene3D Tetratricopeptide repeat domain 503 600 IPR011990 GO:0005515
Psa5g1956 683 Gene3D Tetratricopeptide repeat domain 46 168 IPR011990 GO:0005515
Psa5g1956 683 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 214 248 IPR002885 -
Psa5g1956 683 TIGRFAM PPR: pentatricopeptide repeat domain 550 583 IPR002885 -
Psa5g1956 683 TIGRFAM PPR: pentatricopeptide repeat domain 116 148 IPR002885 -
Psa5g1956 683 TIGRFAM PPR: pentatricopeptide repeat domain 317 347 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1956 Psa-Chr5 151506914 151510034 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1956 23 678 Glycoside Hydrolase AT3G49170 27.246 4.60e-81 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1956 - - gmx:100775626 1035.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1956 5 151506914 151510034 Psa5g1956 5 151506914 151510034 ECH