Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1955 ATGGAGTTGAATGGCGTGTGCCGCACGCTTCGTGAAGCGAGACAACTCCACCTGTCGTTCCTCAAAACCGGTACTCTGCATTCATCCGTCACCACCACCAACCGCCTCCTCCAATTATACTCCCGGCGCGGCTCTCTTCAAGATGCATCTAAACTGTTCGATGAAATGCCGCAAACAAATGCTTTCTCATGGAACACCCTCATCGAAGCCCATATCAACTCAGGCAACAGAAACAAGTCACTGCAATTGTTTCATGCCATGCCCCAGAAAACCCAATACTCCTGGAACCTTCTTGTTTCAACGTTTTCCAAATCTGGTGACCTTCAACTGGCTCACTCTCTCTTCAACGCCATGCCTATGAAGAACCCCCTTGTCTGGAATTCCATCATTCATGGTTACTCTCGACACGGGCATCCAAGAAAAGCTCTTTTACTCTTTAAGGAGATGAATTTAGACCCTTCAGAAACGGTGCACCGCGATGCCTTTGCGTTGTCAACCGTTTTTGGTGCATGTGCTGAATTGTTTGCTCTTGATTGTGGAAAACAAGTACATGCTCGTGTTTTCATTGATGGTTTTGAATTTGAGTTTGACAAGATTCTGTGCAGTTCAATTGTTAACTTTTATGGGAAATGTGGTGATTTGGATAGTGCTGCTCAGGTTGTGGGTTTTGTGAAGGAAGTAGATGACTTTTCTTTATCTGCTTTGGTATCAGGTTATGCAAATGCTGGTAGAATGAGAGATGCGAGAAGGGTTTTTGATAGCATGGTTGATCCTTGTTCTGTGCTGTGGAATTCAATTATTTCGGGATATGTGTCGAATGGTGAGGAAATGGAGGCATTGGCTCTCTTCAACTCAATGCGTAGGAATGGTATTTGGGGAGACTTTTCTGCTGTTGCAAACATTTTGAGTGCTGCTAGTAGCTTGCTCAATGTTGAACTTGTTAAGCAAATGCATGACCATGCTTTTAAAATTGGGGCAACTTGTGATATCGTGGTTTCTAGTGCTTTGCTTGATGCATACTCCAAATGTCAACACCCTCATGAAGCTTGCAAGTTGTTCGGTGAGCTCAAAGCCTATGATGCAATCTTACTTAATACTATGATTACTGTTTATTGTAATTGTGGAAGAATAGAAGACGCAAAATGGATTTTTAACACGATGCCTAATAAAACCCTGATTTCATGGAATTCAATCTTGGTTGGCCTCACTCAGAATGCGTGTCCAAGTGAGGCGTTGGATACTTTTTGTAAGATGAATAAGCTGGATGTGAAAATGGACAAGTTTAGCTTTGCCAGTGTTATCAGTGCTTGTGCTTGTAAATCATCCCTTGAACTTGGTGAGCAAGTATTTGCTAAAGCTATTACTTTGGGGCTTGAATCTGACCAAATCATTTCTACCTCACTTGTTGACTTTTATTGTAAATGTGGTCTTGTTGAGATGGGACGGAAAGTTTTTGATGGAATGATAAAAACTGATGAAGTTTCGTGGAATACAATGCTGATGGGATATGCGACAAATGGATATGGAATAGAAGCACTAACCCTTTTTAATGAAATGAGGTATAGTGTTGTGAGGCCATCTGCTATTACTTTTACTGGTGTTCTTTCAGCCTGTGATCATTGCGGTCTGGTAGAAGAAGGAAGAAATCTGTTCCATACTATGAAGCACGAGTATAATATAAATCCAGGGATTGAACATTACTCTTGCATGGTTGACCTTTTTGCCAGAGCTGGTTGTTTTGGGGAGGCAATGTATCTTATTGAAGAGATGCCTTTTCAGGCTGATGCTAACATGTGGTTATCAGTATTAAGAGGCTGCATATCCTATGGAAACAGGACTATTGGAAAGATGGCAGCAGAGCAAATTATTCAGCTTGATCCTGAAAATCCAGGTGCTTATATACAATTATCTAACATACTTGCAACTTCTGAAGACTGGGAAGGATCAGCAAAAGTAAGAGAGTTAATGAGAGATAAAAATGTTCAGAAGATTCCCGGTTGCAGTTGGGCAGATTGTTGA 2019 0.4146 MELNGVCRTLREARQLHLSFLKTGTLHSSVTTTNRLLQLYSRRGSLQDASKLFDEMPQTNAFSWNTLIEAHINSGNRNKSLQLFHAMPQKTQYSWNLLVSTFSKSGDLQLAHSLFNAMPMKNPLVWNSIIHGYSRHGHPRKALLLFKEMNLDPSETVHRDAFALSTVFGACAELFALDCGKQVHARVFIDGFEFEFDKILCSSIVNFYGKCGDLDSAAQVVGFVKEVDDFSLSALVSGYANAGRMRDARRVFDSMVDPCSVLWNSIISGYVSNGEEMEALALFNSMRRNGIWGDFSAVANILSAASSLLNVELVKQMHDHAFKIGATCDIVVSSALLDAYSKCQHPHEACKLFGELKAYDAILLNTMITVYCNCGRIEDAKWIFNTMPNKTLISWNSILVGLTQNACPSEALDTFCKMNKLDVKMDKFSFASVISACACKSSLELGEQVFAKAITLGLESDQIISTSLVDFYCKCGLVEMGRKVFDGMIKTDEVSWNTMLMGYATNGYGIEALTLFNEMRYSVVRPSAITFTGVLSACDHCGLVEEGRNLFHTMKHEYNINPGIEHYSCMVDLFARAGCFGEAMYLIEEMPFQADANMWLSVLRGCISYGNRTIGKMAAEQIIQLDPENPGAYIQLSNILATSEDWEGSAKVRELMRDKNVQKIPGCSWADC* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1955 672 SUPERFAMILY TPR-like 36 650 IPR011990 GO:0005515
Psa5g1955 672 PANTHER OS07G0578800 PROTEIN-RELATED 98 150 IPR045215 GO:0003723|GO:0009451
Psa5g1955 672 PANTHER OS07G0578800 PROTEIN-RELATED 159 672 IPR045215 GO:0003723|GO:0009451
Psa5g1955 672 PANTHER OS07G0578800 PROTEIN-RELATED 10 91 IPR045215 GO:0003723|GO:0009451
Psa5g1955 672 Pfam E motif 609 669 IPR046848 -
Psa5g1955 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 492 526 IPR002885 -
Psa5g1955 672 Pfam PPR repeat family 492 538 IPR002885 -
Psa5g1955 672 Gene3D Tetratricopeptide repeat domain 153 291 IPR011990 GO:0005515
Psa5g1955 672 Gene3D Tetratricopeptide repeat domain 2 150 IPR011990 GO:0005515
Psa5g1955 672 Gene3D Tetratricopeptide repeat domain 296 441 IPR011990 GO:0005515
Psa5g1955 672 Gene3D Tetratricopeptide repeat domain 539 664 IPR011990 GO:0005515
Psa5g1955 672 Gene3D Tetratricopeptide repeat domain 442 538 IPR011990 GO:0005515
Psa5g1955 672 PANTHER OS03G0849700 PROTEIN 159 672 - -
Psa5g1955 672 PANTHER OS03G0849700 PROTEIN 10 91 - -
Psa5g1955 672 PANTHER OS03G0849700 PROTEIN 98 150 - -
Psa5g1955 672 TIGRFAM PPR: pentatricopeptide repeat domain 494 520 IPR002885 -
Psa5g1955 672 TIGRFAM PPR: pentatricopeptide repeat domain 231 256 IPR002885 -
Psa5g1955 672 TIGRFAM PPR: pentatricopeptide repeat domain 125 149 IPR002885 -
Psa5g1955 672 TIGRFAM PPR: pentatricopeptide repeat domain 261 291 IPR002885 -
Psa5g1955 672 TIGRFAM PPR: pentatricopeptide repeat domain 567 590 IPR002885 -
Psa5g1955 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 258 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 62 89 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 334 357 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 365 389 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 261 291 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 93 121 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 125 149 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 32 57 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 393 421 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 231 256 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 466 490 IPR002885 -
Psa5g1955 672 Pfam PPR repeat 566 590 IPR002885 -
Psa5g1955 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 259 293 IPR002885 -
Psa5g1955 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 122 156 IPR002885 -
Psa5g1955 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Psa5g1955 672 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 360 394 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1955 Psa-Chr5 151501986 151505148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1955 8 671 Glycoside Hydrolase AT3G49170 29.155 5.65e-99 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1955 - - gmx:100790756 1095.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1955 5 151501986 151505148 Psa5g1955 5 151501986 151505148 ECH