Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1952 ATGTACCCATTTTTCAAGCAAACACAGTGTCTTCACTCCTCACTTTCTCATTGTTCTACACTCCTACACCACTCTTTATCTCATAAATCCTCTAACTTTCTCAAAACCGTCCATGCCCACTTCCTCAAATTGGGTCTTAATACCTATACATATTTGGGTAATCGCTGTATCGATCTTTATACTGAATTTGGTCACATTAATGATGCCTTGAAGGTGTTTGAGGATATTTCTTATAAGAACTCCACTTCCTGGAACATTTGCTTGAAAGGGTTGTTCAAAAGTGGACAATTTGGCAAGGCCTGCCACATGTTTGATGGAATGCCTCTTAGAGATGTTGTTAGTTGGAACACTATGATTTCGGGTTATGCTTCATGTGGGTTTTCTAGTCATGCCTTGGAGCTTTTTGTTGAAATGCAAGGTGTTGGTGTGAGACCGAGTGTGTTCACTTTCTCAATTTTAACATCGGTTGTGTCGAGTCCTTGTCATGCTAAGCAGGTTCATGGTAGGATGATTAGAAGTTGGATGGATTTGTCTAATGTGGTGATTGGAAATTCGTTGATAACTATGTATGGGAAGTTTGGTCTTGTTGATTATTCTTTTGGCGTGATTTTGACTATGAAGCAGCTTGATGTTATATCTTGGAATTCTTTGATATGGGCTTGTCATAGAGCTGGGTGCCAAGAGCTTGCTCTAGAGCAGTTCTGTTGTATGAGAGCTGCTGAGTTGTTACCTGATCAGTTTACGTGTTCAACATTGATGAGTGTCTGTTCCAGCTTGCGAGATTTGGAAAAGGGTAAGCAAGTTTTTGCCTTTTGTTTCAAGGTGGGATTTGTTTATAATAGCATTGTATCAGGTGCTGCTATTGACCTCTTTTCCAAATGCAACAGATTGGAGGACGCTGTCCGCCACTTTAAAGAACAAGAACAATGGGATTCGGCTCTATGCAATTCCATGATTTCATGTTATGCTAGACATGGTTTGGGGGAAGATGCTCTTCAGCTCTTTGTGCTGACCTTGAGGAAGAATATCAGACCAACGGAATATACCGTTAGCTGTCTTCTGAGTTCTGTTTCTATTTTCTTGCCAGTCGAACTGGGTAATCAAGTACATGCTTTGGTTCCTAAGTTGGGTTTCGAATCAGATGCAGTTGTTGCCAATTCACTTGTTGATATGTATGCTAAATTTGGATTTATTGATGATGCCTTGAATATCTTCAACGAAATAAAAGCAAAAGATTTGGTATCATGGAACACTATAATGATGGGACTGTGTTACAATGGCAGAGTGTCTGTGACCTTGGATCTCTTCAAGGAGTTGATAAGAGAAGGAATGCCACCGGATCGAATAACATTTGCGGCAGTTCTACTAGCATGCAACTATGGGAGTATGGTTGATGAAGGAATTAAGATATTTTCTCTAATGGAGATGGAATTCGGAGTAAAACCAGAGGAAGAACACTATTCATATGTTGTAGAGATCTTATGTAGAGCTGGTAAGGTCAAAGAAGCCATTGACATTGTGGAAAAAATGTCGTGTGGAACCACCCCTGACATTTGGAGGTCAATTATTTCTGCGTGTGCAAGATATGGAGACTTGCAAGCTACTGAAATAGTTGCAACTAAAATAATGGAGAGCTCACCACAGACATCCTTACCGTACTTGGTGTTGGCTCAGGTATATCAGATCAGTGGCCGTTGGGAGAGCACAGTTCGAGTGAGGAAGGCTCTGGGAAATAGAGGTAGTAAAGAGCTCATTGGATACAGTTGGGTGGGAATAAAAAACCATGTATATACTTTTGGATCAAACCAATTACAGCATTATGGTGGCAAAGATATTTATCTGCTACTCAATTTACTGGTCTGGGAGATAGAGACTGATTTTAATGTCTAA 1890 0.4026 MYPFFKQTQCLHSSLSHCSTLLHHSLSHKSSNFLKTVHAHFLKLGLNTYTYLGNRCIDLYTEFGHINDALKVFEDISYKNSTSWNICLKGLFKSGQFGKACHMFDGMPLRDVVSWNTMISGYASCGFSSHALELFVEMQGVGVRPSVFTFSILTSVVSSPCHAKQVHGRMIRSWMDLSNVVIGNSLITMYGKFGLVDYSFGVILTMKQLDVISWNSLIWACHRAGCQELALEQFCCMRAAELLPDQFTCSTLMSVCSSLRDLEKGKQVFAFCFKVGFVYNSIVSGAAIDLFSKCNRLEDAVRHFKEQEQWDSALCNSMISCYARHGLGEDALQLFVLTLRKNIRPTEYTVSCLLSSVSIFLPVELGNQVHALVPKLGFESDAVVANSLVDMYAKFGFIDDALNIFNEIKAKDLVSWNTIMMGLCYNGRVSVTLDLFKELIREGMPPDRITFAAVLLACNYGSMVDEGIKIFSLMEMEFGVKPEEEHYSYVVEILCRAGKVKEAIDIVEKMSCGTTPDIWRSIISACARYGDLQATEIVATKIMESSPQTSLPYLVLAQVYQISGRWESTVRVRKALGNRGSKELIGYSWVGIKNHVYTFGSNQLQHYGGKDIYLLLNLLVWEIETDFNV* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1952 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Psa5g1952 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 111 145 IPR002885 -
Psa5g1952 629 PANTHER OS07G0578800 PROTEIN-RELATED 1 627 IPR045215 GO:0003723|GO:0009451
Psa5g1952 629 Pfam PPR repeat 479 511 IPR002885 -
Psa5g1952 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 381 411 IPR002885 -
Psa5g1952 629 PANTHER OS03G0435200 PROTEIN 1 627 - -
Psa5g1952 629 Pfam PPR repeat 83 109 IPR002885 -
Psa5g1952 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Psa5g1952 629 Gene3D Tetratricopeptide repeat domain 462 594 IPR011990 GO:0005515
Psa5g1952 629 Gene3D Tetratricopeptide repeat domain 266 359 IPR011990 GO:0005515
Psa5g1952 629 TIGRFAM PPR: pentatricopeptide repeat domain 83 112 IPR002885 -
Psa5g1952 629 TIGRFAM PPR: pentatricopeptide repeat domain 315 346 IPR002885 -
Psa5g1952 629 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
Psa5g1952 629 TIGRFAM PPR: pentatricopeptide repeat domain 113 146 IPR002885 -
Psa5g1952 629 Pfam Pentatricopeptide repeat domain 208 256 IPR002885 -
Psa5g1952 629 Pfam PPR repeat family 411 457 IPR002885 -
Psa5g1952 629 Pfam PPR repeat family 110 153 IPR002885 -
Psa5g1952 629 Pfam PPR repeat family 311 356 IPR002885 -
Psa5g1952 629 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 311 345 IPR002885 -
Psa5g1952 629 Gene3D Tetratricopeptide repeat domain 363 461 IPR011990 GO:0005515
Psa5g1952 629 Gene3D Tetratricopeptide repeat domain 160 265 IPR011990 GO:0005515
Psa5g1952 629 Gene3D Tetratricopeptide repeat domain 19 159 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1952 Psa-Chr5 151483276 151486014 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1952 88 624 Glycoside Hydrolase AT3G49170 30.109 2.51e-78 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1952 - - gmx:100819993 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1952 5 151483276 151486014 Psa5g1952 5 151483276 151486014 ECH