Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1950 ATGGCAACCTTGTTATTTACAAGGTCTAGGACCTTATTACGACTTCATAATCACCTACTCTTCTTGTTACCAATAGGTTCACGATCACCGCCATTCCTTAACCATTGCTCCAATTCTCATTTCTTACCATCATTTCTTCTATCATCATTGCGTTATGAATCTACCAAAGCTCACCCACAATTGGAGGATTTGCAGCACCATCATCATCAGGTGATTGATTTTCCTGGAGGGAAAGTTGGATTCACTTCTGAAATGAGATTCATTTCTGATACTTCTCACATAAGGGTTCCATGTTATCGTGTCCTTGACGACGATGGCGAGCTCGTGAAACCGACCAATCAAGTTCAGGTTAGCAAAGAATTGGCTGTGAGAATGCATTCTGAGATGGTCACTCTTCAAACAATGGACAGCATATTCTATGAGCTGCAGAGGCAGGGAAGAATTTCCTTCTACCTCACTACATCAGGAGAAGAAGCTGTTAACATTGCATCAGCAGCTGCACTTTCTTCTCATGATGTTATCTTGCCTCAGTACCGGGAGCCTGGAGTTCTGTTATGGCGTGGTTTCACTCTGCAACAATTTGCTCATCAATGCTTTGGAAACACAAATGATTTTGGTAAAGGAAGACAAATGCCAATACACTACGGCTCTAACAAACACAATTACTTCACAGTCTCGTCGCCTATTGCAACACAACTTCCTCAAGCTGTAGGCGCTGCTTATTCGCTCAAAATGGACGGAAAAAGTGCTTGTGCAGTCACTTTTTGTGGGGATGGAAGTACTAGTGAGGGAGATTTTCATGCTGCTATGAACTTTGCAGCAGTAATGGAAGCACCAGTTGTTTTCATATGTCGTAACAACGGATGGGCCATCAGTACCCCTGTCGAAGAACAATTTCGAAGTGATGGTATTGTGGTGAAAGGTCAAGCTTATGGCATATGGAGTATCAGAGTAGATGGAAATGATGCTCTTGCTGTTTATAGTGCAGTTCATACTGCACGCGAAATAGCTATAAAAGAACAAAGACCAGTTTTAATCGAGGCTCTTACTTATAGAGTAGGGCACCACTCTACATCTGACGATTCAACTAAGTACCGATCAACCGGTGAAATTGAATACTGGAAGATGGAAAGAAATCCAGTGAACAGATTCAAAAGATGGGTTGAAAGGAACGGTTGGTGGAGCGAAAAGGATGAATTGGAGCTTCGAAGCAGTGTTAGGAAGCAATTAATGCATGCAATTCAAGTGGCAGAGAAAGCACAAAAACCTCCACTCGAGGACATGTTTACTGATGTTTACGACAAACTTTCATCGAACCTTGAGGAGCAAGAAAGAGACCTTAGAAAAACCATTGAGAAGCATCCCAAAGATTACCCTTCTGATGTTCCTTTGTAG 1395 0.4222 MATLLFTRSRTLLRLHNHLLFLLPIGSRSPPFLNHCSNSHFLPSFLLSSLRYESTKAHPQLEDLQHHHHQVIDFPGGKVGFTSEMRFISDTSHIRVPCYRVLDDDGELVKPTNQVQVSKELAVRMHSEMVTLQTMDSIFYELQRQGRISFYLTTSGEEAVNIASAAALSSHDVILPQYREPGVLLWRGFTLQQFAHQCFGNTNDFGKGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTFCGDGSTSEGDFHAAMNFAAVMEAPVVFICRNNGWAISTPVEEQFRSDGIVVKGQAYGIWSIRVDGNDALAVYSAVHTAREIAIKEQRPVLIEALTYRVGHHSTSDDSTKYRSTGEIEYWKMERNPVNRFKRWVERNGWWSEKDELELRSSVRKQLMHAIQVAEKAQKPPLEDMFTDVYDKLSSNLEEQERDLRKTIEKHPKDYPSDVPL* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1950 464 Coils Coil 433 453 - -
Psa5g1950 464 CDD TPP_E1_PDC_ADC_BCADC 125 417 - -
Psa5g1950 464 Gene3D - 67 462 - -
Psa5g1950 464 Pfam Dehydrogenase E1 component 129 424 IPR001017 GO:0016624
Psa5g1950 464 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 2, MITOCHONDRIAL 48 464 - -
Psa5g1950 464 MobiDBLite consensus disorder prediction 444 464 - -
Psa5g1950 464 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 96 459 IPR029061 -
Psa5g1950 464 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 48 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1950 Psa-Chr5 151457334 151466929 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g1950 6 301 Acyl Lipid Metabolism Gene Families AT1G21400 64.169 2.01e-136 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1950 K00166 - gmx:100796766 739.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1950 5 151457334 151466929 Psa5g1950 5 151457334 151466929 ECH